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37 protocols using fluoroshield containing dapi

1

Visualizing PAR2 Expression in cAMP-CHO Cells

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PAR2-cAMP-CHO and cAMP-CHO cells were seeded on an 8-well chamber slide (ibidi, Germany). The slides were washed gently with PBS, fixed in 4% paraformaldehyde for 10 min, and permeabilized in PBS containing 0.25% triton X-100 for 15 min. The slides were blocked in PBS containing 3% BSA for 1 h and then incubated with anti-PAR2 antibody (SAM11) Alexa Fluor 647 (1:50, Santa Cruz Biotechnology, USA) for 1 h. After PBS washing, the slides were mounted with Fluoroshield containing DAPI (Sigma, USA) and observed under a Zeiss LSM 710 confocal microscope (ZEISS, Germany).
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2

DNA Repair Assay in OPSCC Cells

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OPSCC cells were grown on 13 mm coverslips until ~70–80 % confluent, irradiated at 4 Gy and incubated for the required time in 5 % CO2 at 37°C to allow for DNA repair. Cells were washed with PBS at room temperature for 5 min before being fixed using 4 % paraformaldehyde for 10 min. Cells were permeabilised with 0.2 % Triton X-100 in PBS for 10 min, then washed three times with 0.1 % Tween-20 for 10 min. Coverslips were blocked to avoid non-specific staining via incubation with 2 % BSA for 30 min at room temperature on a rocking platform with either γH2AX, 53BP1 or RAD51 antibodies in 2 % BSA overnight at 4°C. Following three washes with PBS, coverslips were incubated with either goat anti-mouse Alexa Fluor 555 or goat anti-rabbit Alexa Fluor 488 secondary antibodies in 2% BSA for 1 h at room temperature in the dark. Finally samples were washed with PBS for 10 min on a rocking platform and mounted on a microscope slide using Fluoroshield containing DAPI (Sigma-Aldrich, Gillingham, UK). Cells were examined using an Olympus BX61 fluorescent microscope with a Photometrics CoolSNAP HQ2 CCD camera. MicroManager software was used to capture images (~500 images/cell line/antibody).
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3

Endothelial Cell Response to Homocysteine Exposure

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HRECs were plated at 1 × 105 in 8-well chamber slides (Sigma-Aldrich Chemical Corp., St. Louis, MO, USA) and treated with and without Hcy (20, 50, or 100 μM) for 24 hr. Cells were then fixed with 4% formalin for 10 min, washed with PBS, and blocked with Power Block (BioGenex, Fremont, CA, Ca. #BS-1310–25) for 1 hr. Thereafter, the cells were incubated at 4 °C overnight with Antibodies for ZO-1(Abcam, Cambridge, Massachusetts, USA, Cat.# ab59720), occludin (Invitrogen, Eugene, Oregon, USA, Mouse monoclonal Cat.# 33–1500), claudin-5 (Invitrogen, Eugene, Oregon, USA, Rabbit Polyclonal Cat.# 34–1600), anti-GSH-1 (Santa Cruz, Dallas, Texas, USA. Cat.# sc-292189), anti-Nrf2 (Abcam, ab137550), anti CD31 (Novus Biologicals, NB100–2284) and anti α-smooth muscle actin (Abcam, ab5694). After primary antibody treatment, cells were then washed 3 times with PBS containing 0.3% Triton-X and incubated with appropriate secondary antibodies (Alexafluor and Texas red avidin, Invitrogen). Slides were cover-slipped using Fluoroshield containing DAPI (Sigma-Aldrich) as a counter stain. Images were captured by fluorescent microscopy (Carl Zeiss, Göttingen, Germany).
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4

Peptide Binding Assay on hBMECs

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hBMECs were cultured on the coverslips coated with collagen type I (Sigma) in 12 well culture plate in EBM-2 medium (Lonza) as was described earlier77 (link) until 70% confluency. Cells were washed 2 times with PBS (pH 7.4) and fixed with 4% paraformaldehyde for 15 min at 37 °C. Cells were washed 3 times with PBS and incubated with 2 μg of a synthetic peptide in PBS for 1 h at room temperature with gentle shaking. After 4 washings, cells were incubated with Streptavidin-FITC conjugate (diluted in PBS 1:500, Rockland Immunochemicals, USA) for overnight in dark at 4 °C with gentle shaking. After 3 washings with PBST-20 (5 min each) and 1 with PBS, coverslips were taken out of the wells, dipped in ethanol for 2–3 sec and mounted using Fluoroshield containing DAPI (Sigma). Scanning was performed on LSM-710 microscope (Zeiss, Germany) using 359–461 nm filter for DAPI and 495–519 nm filter for FITC. The assay was performed in biological triplicates. As a positive control, rDIII and rNadA (20 µg diluted in 1 ml of PBS) were used in the assay and their binding on hBMECs was detected with anti-6x His antibody® conjugated with FITC (diluted in PBS with 1% BSA, 1:500, Abcam, UK). In the case of negative control, synthetic peptides were excluded from the experiment.
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5

Histological Analysis of Grafted Tissue

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By embedding with optimal cutting temperature, the harvested tissue was frozen at −80°C overnight. Ten micrometers thick tissue sections were cut and placed in distilled water, dipped in alum-hematoxylin solution (for 1–2 min), washed twice with tap water (10 s each), dipped in 1% ammonia solution (for 5–10 s), and then stained with eosin, and dehydrated, cleaned, and mounted. For the immunostaining of the grafted tissue, the slides were hydrated and first stained with the primary antibody against perilipin, which was used at a 1:200 dilution (Cell signaling, USA). Staining with the secondary antibody, which was fluorescein isothiocyanate-conjugated goat anti-rabbit IgG used at a 1:200 dilution (ZSGB-Bio, China), was then performed. Coverslips were mounted with Fluoroshield containing DAPI (Sigma-Aldrich, Germany), to allow the visualization of the cell nuclei.
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6

Exosome-Mediated Amyloid Plaque Labeling

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To directly label plaques, brain cryosections were washed for 1 min each in 70% and 80% ethanol and then incubated with 1% thioflavin S in 80% ethanol for 15 min. Slides were then washed for 1 min each in 80% and 70% ethanol, rinsed in deionized water, and mounted with Fluoroshield containing DAPI (Sigma). For exosome injection, donor astrocytes were labeled with Vybrant CM-DiI (5 µL/mL DMEM) for 1 h followed by 40 µM Aβ25-35 for 3 days. DiI-labeled exosomes were isolated as described above, resuspended in sterile PBS, and injected into the brains 10-day-old 5XFAD mice. Mice were sacrificed 48 h later, and the brains fixed in 4% p-formaldehyde/PBS. For immunohistochemistry, brain cryosections were permeabilized with 0.2% Triton X-100 in PBS for 10 minutes. Amyloid plaques were labeled with 1 µg/mL Aβ1-42 ABfinity™ recombinant rabbit monoclonal antibody (Life Technologies) in PBS plus 0.5% BSA. The secondary antibody AlexaFluor488-donkey anti-rabbit IgG (Jackson Immunoresearch) used at 1µg/mL in PBS plus 0.5% BSA. Confocal fluorescence microscopy was performed with an LSM 510 confocal scanning microscope using LSM 510 Meta 3.2 software for image acquisition. Images obtained with secondary antibody only were used as negative controls representing the background intensity in a particular laser channel.
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7

Matrigel-based 3D Spheroid Assay

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Ten microliters of 100% Matrigel (Sigma-Aldrich Chemie Gmbh, Munich, Germany, Corning art. 356230) was used to coat the bottom of each well of an eight-chamber slide. A suspension containing 15,000 cells/mL and 4% Matrigel was added on top of the first coating. Spheres were allowed to form for 6 days after which the media was replaced with media containing DMSO, afatinib, or crizotinib alone or in combination. The drug exposure was done for 72 h. Media was removed and each well was washed twice with 1× PBS. The slides were fixed in 4% buffered formaldehyde for 15 min and thereafter washed twice with 1× PBS, permeabilized with Triton X-100 for 1 min, and blocked with 5% horse serum for 1 h. Slides were then incubated for 1.5 h with Texas Red × Phalloidin (Thermo Fisher Scientific, Waltham, MA, USA). Slides were washed thrice with 1× PBS, mounted with Fluoroshield containing DAPI (Sigma-Aldrich Chemie Gmbh, Munich, Germany) and imaged using Zeiss AxioImager M2 microscope.
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8

Inflammatory Markers Assessment in CBS Mice

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Inflammatory markers TNF-α and IL1β were assessed using immunofluorescence in frozen sections (eye and brain prepared from cbs+/+, cbs+/−, and cbs−/− mice) as per our published method [19 (link)]. Briefly, frozen sections were fixed with 4% paraformaldehyde and blocked with Power Block, then incubated with primary antibody for TNF-α (1/200, ab1793) and IL1β (1/250, ab9722) from Abcam Corp. (Cambridge, MA) and biotinylated with GSL I-isolectin B4 (Vector Laboratories, Burlingame, Ca, Cat#: B-1205, 7μL/mL) for 3 h at 37 °C, followed by incubation with an appropriate secondary antibody (Alexafluor and Texas red avidin, Invitrogen). Next, sections were cover-slipped with Fluoroshield containing DAPI (Sigma-Aldrich) to label the nuclei. An Axioplan-2 fluorescent microscope (Carl Zeiss, Göttingen, Germany) equipped with a high resolution microscope (HRM) camera was used to capture images using Zeiss Axiovision digital image processing software (version 4.8). Samples were representative to at least three mice for each IF experiment.
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9

Immunofluorescence Staining of CD105 and Insulin

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Cells were cultured to 70–80% confluence and dissociated into a single-cell suspension using TrypLE as described [33 (link)]. Cells and pancreatic tissue were then fixed in 10% cold formalin, prepared in a paraffin block, and sectioned. Antigen retrieval was performed using a citric acid-based antigen unmasking solution (Vector, pH 6.0). Sections were treated with protein block (Biogenex, Fremont, CA) to reduce background signal, followed by incubation with mouse anti-CD105 antibody (ready to use; Biogenex) and ALEXA 488-conjugated goat anti-mouse IgG antibody (1:200 dilution; ThermoFisher). Guinea pig anti-insulin (ThermoFisher) and ALEXA 647-conjugated goat anti-Guinea pig IgG antibodies (1:200 dilution; ThermoFisher) were used for pancreatic tissue staining only. Fluoroshield™ containing DAPI (Sigma Aldrich St. Louis, MO) was used to stain nuclei. Image acquisition was done using an Observer Z1 microscope (Carl Zeiss), with the objective lens set at 20×. Image processing was done using the Zen 2.0 software.
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10

Histological Evaluation of Cardiac Fibrosis and Immune Cells

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Formalin-fixed, paraffin-embedded hearts from sham and HF mice were sectioned at 5 μm thickness, deparaffinized, and rehydrated. Histological staining was performed as previously described.6 (link), 21 (link), 23 (link) Masson’s trichrome was used to evaluate tissue fibrosis and Alexa Fluor 488–conjugated wheat germ agglutinin (Invitrogen) to assess myocyte area, as quantified from 5 to 6 high-power fields per section in non-infarcted myocardium using Metamorph software version 6.3r5 (Molecular Devices).
To evaluate for tissue abundance of CD4+ and CD8+ T-cells, heart sections were embedded in OCT compound (Tissue-Tek OCT), and then kept at −80°C until sectioning. Sections (7 μm thickness) were fixed with 4% paraformaldehyde in PBS, and labeled with either rat anti-mouse CD4 (Clone GK1.5; eBiosciences) or CD8 antibody (Clone 4SM15; eBiosciences). Goat anti-rat antibody conjugated with Alex Fluor 555 and 488 (Life Technologies) were used as secondary antibodies for CD4 and CD8, respectively, and fluoroshield-containing DAPI (Sigma-Aldrich) was used as the mounting medium. CD4+ or CD8+ cells were quantified using confocal microscopy from 5–6 sections and 3–4 mice from each group. All measurements were conducted in a blinded manner. Confocal microscopy was performed on an LSM710 microscope (Zeiss).
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