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Protein lysate buffer

Manufactured by Beyotime
Sourced in China

Protein lysate buffer is a solution used to extract and solubilize proteins from cellular samples. It facilitates the lysis of cells and the release of their intracellular contents, including proteins. This buffer helps maintain the structural integrity and stability of the extracted proteins, allowing for further analysis and experimentation.

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7 protocols using protein lysate buffer

1

Protein Separation and Western Blot Analysis

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Protein samples were prepared with the protein lysate buffer (Beyotime, Shanghai, China) supplemented with 100 mM PMSF, and then the protein samples with same amount (15 µg/lane) were separated with SDS-PAGE and transferred to the Immobilon™ PVDF membrane (Millipore, Billerica, MA, USA) using Bio-Rad gel system (Bio-Rad, Hercules, CA, USA). The cytosol and nucleus protein samples were prepared with Nuclear and Cytoplasmic Protein Extraction Kit (P0027, Beyotimes) following the instruction of manufacturer. The blot was performed following the instructions of the suppliers of various antibodies, including anti-GAS2 (ab109762, Abcam, Cambridge, MA, USA), anti-HNRPDL (ab83215, Abcam), anti-beta catenin (ab22656, Abcam), anti-Histone H3 (AH433-1, Beyotimes) and anti-Tublin (T6074, Sigma, St Louis, MO, USA). The blot was developed with chemiluminescence substrate (ECL) (GE Healthcare Life Sciences, Piscataway, NJ) automatically (Kodak Medical X-Ray Processor 102).
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2

Western Blot Protein Expression Analysis

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Protein samples were prepared using protein lysate buffer (Beyotime, Shanghai, China) and equal amounts of protein samples were separated with SDS-PAGE. These samples were transferred from the electrophoresed gel onto a polyvinylidene difluoride (PVDF) membrane (Millipore, Billerica, MA, USA). The membrane was subsequently incubated with specific antibodies and developed the films with an ECL detection system (GE Healthcare Life Sciences, Piscataway, NJ, USA). The antibodies used in this study are listed in Supplementary Table S4.
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3

Protein Extraction and Western Blotting

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Protein samples were prepared using protein lysate buffer (Beyotime, Shanghai, China) supplemented with phenylmethanesulfonyl fluoride (PMSF, final concentration 1 mM). Equal amounts of protein samples were separated with sodium dodecyl sulfate–polyacrylamide gel electrophoresis (SDS–PAGE) and transferred from the electrophoresed gel onto a polyvinylidene difluoride (PVDF) membrane (Millipore, Billerica, MA, USA). To collect secreted protein samples, same amounts of cells were cultured with serum-free medium for 24 h, and the culture medium was processed with Amicon Ultra Centrifugal Filter (UFC801096, Millipore) to concentrate secretion proteins, and the remaining samples were analyzed by western blotting. Ponceau S staining was used as a loading control. The information of antibodies used in this study is listed in Additional file 1: Table S4. The specificity of WNT3 antibody was verified by gene silencing and forced expression experiments. The film was developed by a Kodak Medical X-ray Processor 102 (Kodak, Rochester, NY, USA) using the ECL detection system (GE Healthcare Life Sciences, Piscataway, NJ, USA).
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4

Isolation and Characterization of Kaempferol and Kaempferide

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Kaempferol and kaempferide were isolated from Hippophae rhamnoides L., as previously described [20 (link),56 (link)]. OA, oil red O and sulforhodamine B (SRB) were purchased from Sigma-Aldrich (St. Louis, MO, USA). Dulbecco’s Modified Eagle Medium (DMEM) was purchased from Gibco (Carlsbad, CA, USA). Fetal Bovine Serum (FBS) was from Zhejiang Tianhang Biological Technology Co., Ltd. Kits of measurement of triglyceride (TG) and superoxide dismutase (SOD) were obtained from Nanjing Jiancheng Bioengineering Institute (Nanjing, China). BCA assay kit and protein lysate buffer were obtained from Beyotime (Shanghai, China). Polyclonal antibodies against FAS, SCD-1, SREBP1, PPARγ, C/EBPα, Perilipin-1, Caveolin-1, Nrf2, HO-1 and β-actin were obtained from Cell Signaling Technology (Danvers, MA, USA).
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5

Silibinin Modulates Mitochondrial Dynamics

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Silibinin, 2′,7′-dichlorodihydrofluorescein diacetate (DCFH-DA), JC-1, dimethyl sulfoxide (DMSO), and H2O2 (30%) were obtained from Sigma-Aldrich (St. Louis, MO, USA). MitoSOXTM Red was from ThermoFisher Scientific (Rockford, IL, USA). Dulbecco’s modified Eagle medium (DMEM) and fetal bovine serum (FBS) were purchased from Gibco (Carlsbad, CA, USA). Kits for measurement of superoxide dismutase (SOD), malondialdehyde (MDA), and glutathione (GSH) were obtained from Nanjing Jiancheng Bioengineering Institute (Nanjing, China). Bicinchonininc acid (BCA) assay kit and protein lysate buffer were obtained from Beyotime (Shanghai, China). Polyclonal antibodies against nuclear factor 2-related factor 2 (Nrf2, #12721), heme oxygenase-1 (HO-1, #26416), extracellular regulated protein kinases (ERK, #4695, p-ERK, #4370), sirtuin 1 (SIRT1, #2493), dynamin-related protein 1 (Drp1, #8570), optic atrophy 1 (OPA1, #67589), and β-actin (#4970) were obtained from Cell Signaling Technology (Danvers, MA, USA).
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6

Western Blot Analysis of Retinal Samples

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Cell, retina and RPE/choroid mixture samples were sonicated in protein lysate buffer (Beyotime, Shanghai, China) containing 1% protease inhibitor cocktails (Beyotime, Shanghai, China). A bicinchoninic acid assay was used to measure the protein concentration. An equal amount (20 μg) of cell lysate was dissolved in the sample buffer, after which samples were boiled for 6 min. After denaturation, electrophoresis was performed with 10% polyacrylamide gels containing 0.1% SDS, and then proteins were transferred to nitrocellulose membranes. The membranes were blocked with 5% non-fat dry milk in Tris-buffered saline with 0.1% Tween-20 (TBS-T) for 1 h at room temperature and rinsed in TBS-T three times. Then the membranes were subsequently incubated with the specific primary antibody overnight at 4°C. The membranes were washed three times with TBS-T and incubated with the corresponding biotinylated secondary antibodies for 1 h at room temperature. Signals were subsequently developed using enhanced chemiluminescence, after which images were captured using a microscope equipped with a CCD camera (Tanon, Shanghai). Finally, the band density of proteins was calculated with the ImageJ software (v1.51, NIH, USA).
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7

Western Blot Protein Expression Analysis

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Total protein extraction was performed using protein lysate buffer in accordance with the manufacturer's instructions (Beyotime). Protein concentration was determined using a BCA Protein Assay Kit (Beyotime). Protein samples (80 μg) were resolved by 8% SDS-PAGE and transferred to PVDF membranes (Millipore) by wet transfer. Then 5% skimmed milk powder was used to block non-specific binding sites at room temperature for 2 h. Membranes were then incubated with CDK6 antibody (1:200), using a GAPDH antibody (1:10000, Proteintech, Chicago, IL, USA) as an internal reference, overnight at 4°C. The following morning, sections were incubated with a corresponding secondary antibody (1:2000, Proteintech)
for 120 min at room temperature. Finally, the Enhanced ECL kit (Beyotime) was used to develop positive signals and the integrated density was analyzed using ImageJ software.
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