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18 protocols using anti pparγ

1

Western Blot Analysis of Ovine Stromal Vascular Fraction Proteins

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Proteins were isolated from ovine SVFs using a lysis buffer supplemented with protease inhibitors (Solarbio, Beijing, China), phosphatase inhibitors (Solarbio, Beijing, China), and phenylmethylsulfonyl fluoride (PMSF, Solarbio, Beijing, China). Equal amounts of protein were separated by SDS-PAGE, transferred to nitrocellulose filter membranes (Solarbio, Beijing, China), and sealed in 5% skim milk for 1 h. Membranes were then incubated with primary antibodies (anti-β-actin: Immunoway, Beijing, China; anti-MEOX2: Proteintech, Wuhan, China; anti-adiponectin: Proteintech, Wuhan, China; anti-C/EBPα: Proteintech, Wuhan, China; anti-FABP4: Proteintech, Wuhan, China; anti-PPARγ: Proteintech, Wuhan, China) and secondary antibodies (LI-COR, Lincoln, NE, USA). After washing three times, the membranes were imaged using an Odyssey Clx imaging system (LI-COR, Lincoln, NE, USA).
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2

Alpinia zerumbet Attenuates Diabetic Neuropathy

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The Fructus Alpiniae zerumbet (FAZ) was collected from Zhenfeng County, Guizhou Province, China. Streptozocin (STZ) was purchased from Sigma (St Louis, MO, USA). RGZ, GW9662 and KN93 were obtained from Sigma (St Louis, MO, USA) and Selleckchem (Shanghai, China), respectively. Commercial kits, measuring insulin, VEGF and blood glucose, were obtained from Elabscience Co. Ltd. (Shanghai, China), Xin Bo Sheng (ERC103, China), Yuanye company (Shanghai, China), respectively. The primary anti-bodies used in this study including anti-GFAP, anti-Phospho-CREB, anti-CREB, anti-Phospho-CaMK II, and anti-CaMK II were supplied by Cell Signaling Technology (Danvers, MA, USA); anti-PPAR-γ, anti-VEGF and anti-β-actin were purchased from Proteintech (Chicago, USA). All reagents used for qRT-PCR were obtained from Takara Bio. (Dalian, China). PPAR-γ siRNA and CREB siRNA were supplied by GenePharma (Shanghai, China).
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3

Western Blot Analysis of MSC Markers

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MSCs were lysed and the protein concentration was determined using the Pierce BCA Protein Assay Kit. Aliquots (40 μg) of protein solutions were resolved by 10% SDS-PAGE (Millipore, Billerica, MA) and transferred to PVDF membranes. The membranes were incubated with diluted anti-RUNX2, anti-PPARγ, anti-GAPDH, anti-β-catenin (ProteinTech), anti-CD9, anti-CD81, anti-Fas, anti-integrin alpha-5, anti-CD44, anti-p65 (Abcam), anti-calreticulin (Cell Signaling Technology), anti-AKT1 (Santa Cruz), anti-p-AKT1, anti-ERK and anti-p-ERK (Abclonal) primary antibodies, followed by the corresponding secondary antibodies (Cell Signaling Technology). Bands were detected using the ECL Kit (NCM bio, Suzhou, China). Images were analyzed using Image J software (National Institutes of Health, Bethesda, MD).
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4

Osteogenic Differentiation Protocol

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PCL was purchased from Beijing Heyanling Pharmaceutical Development Co. Ltd. (Beijing, China) and had been identified as the Genuine Medicinal Herb by Professor Lei Yan in Shandong First Medical University and Shandong Academy of Medical Sciences. A BCIP/NBT Alkaline Phosphatase Color Development Kit, DAPI Staining Solution, Blocking Buffer for Immunol Staining, Antifade Mounting Medium, a bicinchoninic acid (BCA) protein assay kit, and penicillin-streptomycin were purchased from Beyotime (Shanghai, China). A ReverTra Ace® Qpcr RT Kit and Taq SYBR® Green Qpcr Premix were purchased from TOYOBO (Shanghai, China). β-Glycerophosphate, P-nitrophenyl phosphate, and ascorbic acid-2-phosphate were purchased from Sigma-Aldrich (St. Louis, MO, USA). TRIzol was obtained from Invitrogen (Carlsbad, CA, USA). The anti-GAPDH, anti-PPARγ, anti-AhR, and CoraLite488-conjugated Affinipure Goat Anti-Rabbit IgG (H + L) antibodies were obtained from Proteintech Group (Wuhan, China). Alizarin red stain was obtained from Cyagen Biosciences (Guangzhou, China). The primers were synthesized by BGI (Shenzhen, China).
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5

Comprehensive Immunoblotting and Immunohistochemistry Protocol

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Western blot analysis was performed as described previously37 (link). Briefly, samples were separated by SDS-PAGE, transferred to polyvinylidene difluoride membranes and incubated overnight at 4 °C with rabbit polyclonal anti-OB (1:1000; Millipore), anti-PPARγ (1:1000; Proteintech), anti-FABP4 (1:500; Proteintech) or mouse polyclonal anti-β-actin (1:10,000; Abcam) antibodies. Membranes were then incubated for 1 h at room temperature with fluorescence-labeled anti-mouse or anti-rabbit IgGs (1:5000) prior to visualization with an Odyssey Imager (LI-COR, Odyssey, NE, USA). Formalin-fixed adipose tissues were sectioned at 4 μm intervals, blocked with 1% BSA, and incubated overnight at 4 °C with anti-OB, anti-PPARγ and anti-PABP4 (1:1000 dilution for each antibody).
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6

Characterizing Metabolic Modifiers in Rodent Models

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BBR and BRB (≥98%) were purchased from Shanghai Yuanye Biological Technology Co., Ltd (Shanghai, China). Metformin (MET) (≥98%) and fenofibrate (FEN) (≥98%) were obtained from Shanghai Aladdin Biochemical Technology Co. Ltd and the National Institute for Food and Drug Control, respectively. The mouse insulin ELISA kit was purchased from ZCIBIO Technology Co. Ltd (Shanghai, China). The total cholesterol (TC), triglyceride (TG), high-density lipid-cholesterol (HDL-c), low-density lipid-cholesterol (LDL-c), alanine aminotransferase (ALT), aspartate aminotransferase (AST), urea nitrogen (BUN), and creatinine (CRE) kits were purchased from Nanjing Jiancheng Institute of Biological Engineering (Nanjing, China). Anti–GLUT2 antibody, the primary antibody used for Western blotting, was obtained from Abcam plc (Cambridge, United States). Anti-ACC1, anti-FAS, anti-GSK3β, and anti–p-GSK3β-Ser9 antibodies were purchased from Cell Signaling Technology, Inc. (Beverly, United States). Anti-ATGL was obtained from Santa Cruz Biotechnology Inc. (Santa Cruz, United States). Anti-GK, anti-PPARα, anti-CPT1, anti-CD36, anti-PPARγ, anti-PEPCK, anti-G6Pase, and anti–β-actin were purchased from Proteintech Group, Inc. (Wuhan, China). A secondary antibody was purchased from Beijing Zhongshan Golden Bridge Biotechnology Co., Ltd (Beijing, China).
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7

Quantitative Western Blot Analysis of Mouse Myocardial Proteins

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The amount of 40-50 μg protein prepared from mouse myocardium or NMVCs was usedin a standard western blot analysis. The polyvinylidene fluoride (PVDF) membrane binding sample protein was incubated with a high affinity anti-Col1a1 antibody (1:1000), anti-Col3a1 antibody (1:1000), anti-α-SMA (1:2000) (Santa Cruz Biotechnology, USA), anti-EZH1 (1:1000), anti-EZH2 (1:1000), anti-PPAR-γ (1:1000) (Proteintech, Rosemont, IL, USA), anti-p-NF-κB P65 (1:1000), anti-NF-κB P65 (1:1000)(Cell SignalingTechnology, USA), respectively. An anti-GAPDH antibody (1:2000) (Santa CruzBiotechnology, USA) was used to detect the level of GAPDH as an internal control. Protein was visualized using the ECL Plus detection system (GE Healthcare, Waukesha, WI).
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8

Comprehensive Kidney Tissue Analysis

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Kidney specimens were fixed in 4% paraformaldehyde and then embedded by paraffin or O.C.T (SAKURA, Tissue-Tek). The paraffin-embedded tissues were cut into 4-μm-thick sections for hematoxylin and eosin (H&E) staining, Sirius red staining and Masson's trichrome staining, and the O.C.T-embedded tissues were cut into 10-μm-thick sections for immunofluorescence staining. For immunofluorescence staining, sections were air-dried, washed, and blocked with 5% goat serum with 0.1% Triton X-100 and 0.1% saponin for 1 h at room temperature. Incubation with anti-EGF (1:100, Santa Cruz), or anti-Glut1 (1:50, Abcam), anti- PPARγ (1:50, Proteintech), anti-PPARα (1:100, Abcam), anti-CD28K (1:100, Boster), anti-CD28K (1:200, Cell Signaling Technology),anti-c-Myc (1:100, Abcam), anti-NRF2 (1:100, Abcam) antibody was performed at 4 °C overnight. After washed 3 times with 1× PBS, the sections were incubated with an goat anti-rabbit 555 (1:500, Invitrogen), goat anti-mouse 488 (1:500, Invitrogen) or LTL (1:300, Vector Laboratories), and DAPI (1:5000, Life Technologies). Fluorescence images were collected using a fluorescence microscope (Nikon).
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9

Skin Protein Expression Analysis

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Extracts of a skin sample or HaCaT cells were prepared and then centrifuged at 12,000 × g to precipitate the insoluble materials. The supernatant was retained and the concentration of protein in the supernatant was measured by a BCA Protein Assay Kit (Beyotime, Jiangsu, China). A sample of supernatant was resolved by SDS-PAGE using a 12% gel. The protein bands in the gel were transferred to a polyvinylidene difluoride (PVDF) membrane and blocked with 5% skim milk, followed by overnight incubation with anti-Filaggrin, anti-Involucrin, anti-PPARα, anti-PPARγ, anti-LXR (Proteintech, Chicago, IL, United States), or anti-ABCA1 (Absin, Shanghai, China). After that, the blot was washed and incubated with the appropriate secondary antibody (Cell Signaling Technology, Beverly, MA, United States). Finally, the blot was subjected to a detection assay using a chemiluminescence substrate (Pierce, Rockford, IL, United States), and images of the blot were acquired using an Amersham Imager (GE Healthcare Biosciences, Pittsburgh, PA, United States).
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10

Identifying PPAR-γ Binding Sites in Immune Checkpoint Genes

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1×107 TAMs were isolated from human MPE by MACS. Chromatin immunoprecipitation (ChIP) assays were performed with an enzymatic ChIP Kit (Cell Signaling Technology) according to the manufacturer’s protocol. Anti-PPAR-γ (1:500, ProteinTech) antibody and normal IgG were used for ChIP. Genes that contain PPAR-γ-binding elements were subsequently confirmed by quantitative PCR (qPCR). The sites of PPAR-γ binds to promoters of inhibitory molecules (triggering receptor expressed by myeloid cells-2 (TREM2), T-cell immunoglobulin-3 (Tim-3), signal regulatory protein α (SIRPα), PD-1, PD-L1) were predicted by JASPAR (http://jaspar.genereg.net). The primers were synthesized by Tsingke Biotech (Beijing, China) and the sequences were listed in online supplemental table S3.
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