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5 protocols using mccoy s 5a

1

Comparative Analysis of Breast Cancer Cell Lines

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Three cell lines representing different molecular subtypes of breast cancer were enrolled in the study, i.e., (i) MCF7 (ER/PR+, HER2low, TP53WT), (ii) MDA MB-231—basal-like subtype, also called triple-negative breast cancer (TNBC; ER/PR-, HER2-, TP53mut), and (iii) SK-BR-3 (ER/PR-, HER2+, TP53mut). MCF7 cell line, in comparison to the MDA-MB-231 cell line, is a poorly aggressive and non-invasive cell line. Overall, it is being considered to have low metastatic potential. SK-BR-3 cells are the least invasive cells out of the three studied, according to previous findings [22 ]. The MCF7 (HTB-22) and MDA-MB-231 (HTB-26) cells were maintained in RPMI-1640 (Biowest, Nuaillé, France), while SK-BR-3 (HTB-30) cells were cultured in McCoy’s 5A (Biowest, Nuaillé, France) media supplemented with 10% fetal bovine serum (FBS) (Biowest, Nuaillé, France) at 37 °C in an atmosphere of 5% CO2 and saturated humidity. All cell lines were obtained from the American Type Culture Collection (ATCC).
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Cell Line Maintenance and Procurement

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Immortalized Bax−/− Bak−/ (DKO) MEFs and their wild type (MEFs) counterparts were obtained from Dr. Korsmeyer’s laboratory. Fip200−/− MEFs and their counterparts (Fip200+/+ MEFs) were gently supplied by Dr. Molinari and originated at Dr. Guan’s laboratory. SH-SY5Y, HeLa, HEK 293 cell lines were obtained from the American Type Culture Collection (ATCC; Manassas, VA, USA). HCT116 human adenocarcinoma cell line was kindly provided by Dr Vogelstein (The Howard Hughes Medical Institute, Sidney Kimmel Comprehensive Cancer Center, The Johns Hopkins School of Medicine, Baltimore, MD, USA).
All cell lines were maintained in DMEM (Gibco, Paisley, Scotland, UK) supplemented with 10% FCS (Gibco, Paisley, Scotland, UK) with the exception of HCT116, which were maintained in McCoy’s 5A (Biowest, Riverside, MO, USA) supplemented with 10% FCS. 5 μg/ml Plasmocin™ (InvivoGen, San Diego, CA, USA) was used as the media antibiotic. General culturing conditions were 37°C and a water-saturated, 5% CO2 atmosphere. Culture dishes and other plastic disposable tools were supplied by VWR (Radnor, PA, USA) and Becton Dickinson (Franklin Lakes, NJ, USA).
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Cell Culture Conditions for Cancer Cell Lines

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BxPC-3 and Capan-1 cell lines were purchased from the ATCC (Manassas, VA, USA). MIA PaCa-2, MCF7, SK-BR-3 and MDA-MB-231 cell lines were in possession of 4Cell Therapies S.A. and were authenticated by Eurofins Genomics (Ebersberg, Germany). Capan-1 cells were cultured in IMDM, 20% FBS and 1× pen/strep (Biowest) on collagen I (Merck, Darmstadt, Germany)-coated plates. The BxPC-3 cell line was cultured with RPMI 1640 with 10% FBS and 1 × pen/strep (Biowest). The SK-BR-3 cell line was cultured in McCoy’s 5a supplemented with 20% FBS and 1 × pen/strep (Biowest). All other cell lines were cultured in DMEM high glucose supplemented with 10% FBS and 1 × pen/strep (Biowest).
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Culturing CRC Cell Lines for Autophagy Studies

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We used three cell lines derived from human CRC, namely RKOBRAFV600E, HCT-15KRASG13D and HCT116KRASG13D; PI3KCA. Cells were maintained at 37 °C under a humidified atmosphere containing 5% CO2. HCT-15 cells were grown in RPMI (Biowest, Nuaillé, France) medium with l-glutamine and HEPES. RKO cells were grown in DMEM (Biowest) with high glucose and supplemented with 1 mM sodium pyruvate and 1.5 g/l sodium bicarbonate. HCT116 cells were grown in McCoy's 5 A (Biowest) medium. All culture media were supplemented with 10% fetal bovine serum and 100 U/ml penicillin/streptomycin. For autophagy studies, we used HBSS (Gibco, Paisley, UK) medium supplemented with 7.5% sodium bicarbonate.
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Culturing Colorectal Cancer Cell Lines

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Colorectal cancer cell lines CaCo2, HCT116 and SW480 were acquired from ATCC (Manassas, VA, USA). All cells are adherent with epithelial morphology. CaCo2 cells were cultured in Dulbecco’s Modified Eagle Medium (DMEM) (Biowest, Nuaillé, France) supplemented with 20% fetal bovine serum (FBS) (GE Healthcare-Hyclone, Chicago, IL, USA); HCT116 cells were cultured in McCoy’s 5A (Biowest, Nuaillé, France) supplemented with 10% FBS and SW480 cells in L-15 medium (ATCC) with 10% FBS. A mixture of antibiotics including 100 U/mL penicillin and 100 μg/mL streptomycin (Lonza, Basel, Switzerland) was added to all cell cultures. Cells were incubated at 37 °C and 5% CO2 in a humidified incubator (HeraCell, Heraeus, Hanau, Germany).
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