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17 protocols using mach 4 universal hrp polymer

1

Immunohistochemical Detection of Parasitic Infections

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CNS sections were submitted for immunohistochemistry anti-S. neurona (polyclonal antibody non-commercial, 1:200), anti-Toxoplasma gondii (VRMD, Pullman, WA, USA, dilution of 1:1000), and anti-Neospora caninum (VRMD, Pullman, WA, USA, dilution of 1:1000). Antigen retrieval was performed with proteinase K for 1 min for S. neurona and 0.1% trypsin for 10 min for N. caninum and T. gondii. Blocking of nonspecific reactions was performed with 5% skim milk for 15 min. The amplification signal was achieved by using MACH 4 Universal HRP-Polymer (Biocare, Pacheco, CA, USA) for S. neurona and LSAB-HRP Universal kit (Dakocytomation, Carpinteria, CA, USA) for N. caninum and T. gondii. The reactions were visualized with 3-amino-9-ethylcarbazole chromogen (AEC; Sigma, St. Louis, Missouri, USA), and subsequently, all slides were counterstained with Harris’ hematoxylin. Positive control samples consisted of known cases of CNS disease caused by S. neurona, T. gondii, and N. caninum. In the negative control slides, primary antibodies were replaced by PBS.
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2

Histological Analysis of Tumor Vasculature

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Tumors were collected, fixed in 10% phosphate-buffered formalin, embedded in paraffin, and cut into 4 µm-thick sections. Sections were stained with Hematoxylin and Eosin (H&E) and Sirius red as described [18 (link)]. For immunohistochemical analysis of the tumor vasculature, anti-mouse CD31 antibody SZ31 (Dianova GmbH, Hamburg, Germany) followed by biotin-conjugated goat anti-rat IgG antibody (Vector Laboratories, Burlingame, CA, USA) and streptavidin-alkaline phosphatase conjugate were used [18 (link)]. CCN2 expression was evaluated using anti-CCN2 (ab6992, Abcam, Milano, Italy), followed by MACH 4 Universal HRP-Polymer (Biocare Medical, Pacheco, CA, USA) [18 (link)]. Negative controls included no-primary antibody control and the use of a specific inhibitory mouse CTGF peptide (ab7861, Abcam). Images (bright field for H&E and CD31 and polarized light for Sirius red) were acquired with Axio Imager Z2 (Zeiss, Felbach, Switzerland). Presence of fibrosis and vascular structures was analyzed using ImageJ software (https://imagej.nih.gov/) and expressed as the percentage of total tumor area. The amount of necrotic tissues in tumors was quantified by blind scoring, exploiting the difference in staining intensity between vital and necrotic tissue.
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3

Immunohistochemical Analysis of DNA Mismatch Repair Proteins

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Immunohistochemical analysis was performed using anti-MLH1 (PM220, Biocare Medical, Concord, CA), anti-MSH2 (PM219, Biocare Medical), anti-MSH6 (PM265, Biocare Medical), and anti-PMS2 (PM344, Biocare Medical). Samples were fixed in 10% neutral buffered formalin, embedded in paraffin, and cut into 5 μm sections. Antigen retrieval was performed using 10mM citrate buffer (anti-MSH2) or Tris-EDTA buffer pH 9.0 (anti-MLH1, anti-MSH6, anti-PMS2) heated to boiling for 32 minutes and blocked for endogenous peroxidase with Peroxidazed 1 (PX968, Biocare Medical). Slides were blocked using Background Sniper (BS966, Biocare Medical), then incubated for one hour at room temperature with antibodies diluted 1:100–1:200. Slides were treated with MACH 4 Universal HRP Polymer (M4U534, Biocare Medical), detected with Betazoid DAB Chromogen (BDB2004, Biocare Medical), counterstained with hematoxylin, dehydrated, and cover-slipped. Samples were graded for the absence or presence of nuclear staining of the MMR proteins. Intact staining in the infiltrating immune cells was used as an internal control. A board-certified pathologist who was blinded to the MSI results confirmed all the IHC results.
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4

Immunohistochemistry for LAG-3 in FFPE Melanoma

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Four µm sections from FFPE metastatic melanoma specimens were heated in an oven at 65°C for 20 minutes, deparaffinized in xylene and rehydrated in graded ethanols. Antigen retrieval was performed in high pH HIER buffer (pH 9) in the Decloaking Chamber (Biocare Medical) at 110°C for 10 minutes. Staining was performed using an Autostainer Plus (Agilent). Slides were incubated with the primary rabbit monoclonal LAG-3 antibody (Cell Signalling, clone D2G4O) at a 1:50 dilution for 30 minutes. The antibody was detected using the MACH 4 Universal HRP-Polymer for 20 mins (Biocare Medical, M4U534) before visualization using the Betazoid DAB Chromogen kit (Biocare, BDB2004L) for 5 mins. Slides were then counterstained with hematoxylin and coverslipped.
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5

Immunohistochemical Analysis of Kidney Tissue

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Original paraffin blocks of foetal and adult kidneys, precursor lesions as well as a TMA containing PRCCs were used for this study. TMA was constructed by one of the authors (GK) as described earlier 11 (link). The 4µm sections placed onto FLEX IHC microscope slides (DAKO, Glostrup, Denmark), dewaxed in xylene and rehydrated in graded ethanol. Antigen retrieval was performed by boiling the slides in 10 µM sodium citrate buffer, pH 6.0 in 2100-Retriever (Pick-Cell Laboratories, Amsterdam, The Netherlands). Endogenous peroxidase activity and nonspecific staining were blocked by incubation with 3% hydrogen peroxide containing 1% normal horse serum for 10min at room temperature.
Slides were then incubated overnight at 4°C in moist chamber with the rabbit polyclonal anti-MET antibody (sc-12, Santa Cruz Biotechnology, Inc.) and rabbit polyclonal anti-HNF1B antibody (HPA-002083, Sigma Aldrich, Inc.), both diluted 1:100. HRP conjugated anti-rabbit secondary antibody (MACH4 Universal HRP-Polymer, Biocare Medical, Concord, CA, USA) was applied for 30min and color was developed using the AEC or DAB substrates (DAKO). Tissue sections were counterstained with Mayer's hematoxylin and cover-slipped with Faramount (DAKO) or Pertex (Medite GmbH, Burgdorf, Germany). In negative controls, the primary antibody was omitted.
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6

Immunohistochemistry for LAG-3 in FFPE Melanoma

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Four µm sections from FFPE metastatic melanoma specimens were heated in an oven at 65°C for 20 minutes, deparaffinized in xylene and rehydrated in graded ethanols. Antigen retrieval was performed in high pH HIER buffer (pH 9) in the Decloaking Chamber (Biocare Medical) at 110°C for 10 minutes. Staining was performed using an Autostainer Plus (Agilent). Slides were incubated with the primary rabbit monoclonal LAG-3 antibody (Cell Signalling, clone D2G4O) at a 1:50 dilution for 30 minutes. The antibody was detected using the MACH 4 Universal HRP-Polymer for 20 mins (Biocare Medical, M4U534) before visualization using the Betazoid DAB Chromogen kit (Biocare, BDB2004L) for 5 mins. Slides were then counterstained with hematoxylin and coverslipped.
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7

Immunohistochemical Analysis of Macrophages and T Cells

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For immunohistochemistry, 5um paraffin tissue sections were pretreated with 10 mM citrate buffer, pH 6, for 5 min in a pressure cooker followed by incubation for 1 h at 25 °C with a rat anti-mouse antibody recognizing Mac-3 (BD Bioscience, clone M3/84, 1:300) on macrophages and with a rabbit anti-CD3 antibody recognizing CD3 (Thermo Scientific, clone SP7, 1:500) on T lymphocytes, we used rabbit-anti-S100A8 (polyclonal rabbit ab, Biomedia, Foster City, CA) and rabbit-anti-S100A9 (polyclonal rabbit ab, Biomedia, Foster City, CA), respectively. Controls using normal sera were run to exclude non-specific staining. Slides were processed using the MACH 4 Universal HRP Polymer (Biocare Medical, Pacheco, CA, USA) and HistoGreen (Linaris, Dossenheim, Germany) as substrate. Tissue sections were counterstained with hematoxylin and finally embedded in Entellan.
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8

Histological Characterization of Uterine and Ovarian Lesions in Cows with E. coli Infection

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Fragments from the uterine horn and ovary were fixed in 10% neutral buffered formalin. Tissue samples were routinely processed for histopathology and stained with hematoxylin and eosin (H&E) followed by microscopic evaluation. Based on the observed histological lesions, three lesions classification groups were proposed: (i) mild cases: histological alterations restricted to the endometrium; (ii) moderate cases: histological lesions in the myometrium, and (iii) severe cases: mixed and accentuated histological lesions, including necrosis. Ovary analysis was performed to identify the presence or absence of corpus luteum.
Uterine sections from two animals, which had E. coli isolated in the purulent content (LBV_029/18 and LBV_037/18), were subjected to immunohistochemistry (IHC) assay using the peroxidase-labelled universal polymer method (MACH 4 Universal HRP-Polymer—Biocare Medical, Pacheco, CA, USA) with a primary polyclonal antibody anti-E. coli (ViroStat, Westbrook, ME, USA), as described by De Lorenzo et al. [18 (link)].
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9

Dual Immunohistochemical Analysis of NPY and NPY1R

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TMA slides were dual immunohistochemicaly stained by using the NPY (Novus Biologicals, Cat# NB600–1094) and NPY1R (Acris Antibodies, Cat# SP4600P) antibodies. Before the dual staining, NPY antibody was tested in test tissue microarray containing different human prostate tissue samples, NPY1R antibody was tested in LnCap prostate cancer cells transfected with scramble or NPY1R siRNA. Briefly, sections were deparaffinized in xylene, rehydrated through decreasing concentrations of alcohol ending in PBS, subjected to heat-induce antigen retrieval in10 mmol/L citrate buffer (pH 6.0) for 5 minutes, 125 °C in a Pascal instrument (Dako Cat# S280030), and allowed to cool off at room temperature. Endogenous peroxidase activity was quenched in 3% hydrogen peroxide solution in distilled water for 10 minutes at room temperature. To inhibit non-specific staining, sections were incubated with a protein blocking solution (Dako Cat# X0909) for 10 minutes at room temperature, then incubated with rabbit polyclonal antibody against NPY (1:4000, 1 h at room temperature). Sections were washed and the bound antibody was detected by using a Biocare Medical MACH 4 universal HRP-polymer (Cat# M4U534 H) with diaminobenzidine (DAB) as chromogen. To ensure that the second staining will not cross react with the first staining, sections were incubated with a denaturing solution for 3 minutes.
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10

Immunohistochemical Analysis of IDH-wild-type GBM

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Standard immunohistochemistry analysis was performed on two patient specimens with a diagnosis of primary IDH-wild-type GBM using SerpinB3 antibody (Invitrogen, PA5–30164) diluted at 1:1000. Four-micrometer thick sections of FFPE tissue on charged slides were baked in the oven at 60C for 60 min before being deparrafinized and re-hydrated. Antigen retrieval was achieved using a pH6 retrieval buffer (Biocare Reveal). Slides were cooled to room temperature and washed in TBS before neutralizing endogenous peroxidase (Biocare Peroxidase 1). Slides were then treated with a serum-free casein background block (Biocare Background Sniper) before pre-incubation in a 10% goat serum block for 60 min. Primary antibody was then added to the slides for overnight incubation at 4C. After incubation, slides were washed well with TBS-T before incubating in HRP polymer (Biocare MACH 4 Universal HRP Polymer). Finally, reaction products were visualized with DAB (Biocare Betazoid DAB Chromogen Kit). Slides were then counterstained with hematoxylin, dehydrated and mounted with xylene-based mounting media.
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