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Nocodazole

Manufactured by Santa Cruz Biotechnology
Sourced in United States, Germany

Nocodazole is a synthetic small molecule that acts as a microtubule-depolymerizing agent. It disrupts the polymerization of microtubules, which are essential cytoskeletal structures within cells. Nocodazole is commonly used in cell biology research to study cell division, cell migration, and other cellular processes that rely on a functional microtubule network.

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8 protocols using nocodazole

1

Centrosome Purification Protocol

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Centrosome purification was performed as previously described with some modifications51 (link). U2OS cells that had been treated with a solution containing 10 μg/ml nocodazole (Santa Cruz Biotechnology, CA, USA) and 5 μg/ml cytochalasin B (Sigma-Aldrich, St. Louis, MO, USA) for 1.5 h were lysed with lysis buffer (1 mM HEPES [pH 7.2], 0.5% NP-40, 0.5 mM MgC12, 0.1% β-mercaptoethanol and protease inhibitors) on ice for 20 min. Swollen nuclei and chromatin aggregates were removed by centrifugation (2500 × g, 10 min). The supernatant was supplemented with HEPES buffer to a final concentration of 10 mM and incubated with 2 Units/ml of DNase I (Sigma-Aldrich, St. Louis, MO, USA) on ice for 30 min. The lysate was underlaid with 1 ml of 60% sucrose solution and centrifuged at 25,000 × g for 30 min at 4 °C. The crude centrosome preparation was diluted with lysis buffer and layered onto a discontinuous sucrose gradient (from bottom to top, containing 0.5, 0.3, and 0.3 ml of 70%, 50%, and 40% sucrose solutions, respectively) in a 5 ml tube, followed by centrifugation at 97,000 × g for 1.5 h at 4 °C. Subsequently, fractions were collected, diluted with 10 mM PIPES (pH 7.2), and centrifuged at 14,000 rpm for 10 min to pellet the centrosomes. The centrosome pellets were resuspended in 40 µl of SDS sample buffer.
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2

Multimodal Evaluation of Cellular Responses

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Rapamycin (Rapa, #sc-3504A), Nocodazole (Noc, #sc-3518), Chlorpromazine (CPZ, #sc-357313), Dynasore (Dyn, #sc-202592), JC-1 (#sc-364116A) and JNK inhibitor, SP600125 (#sc-200635) were purchased from Santa Cruz Biotechnology. 2ʹ,7ʹ-dichlorofluorescein diacetate (DCFDA, # D6883), Mono-dansylcadaverine (MDC, # D4008), Chloroquine (CQ, #C6628), RIPA Buffer (#R0278), Acridine Orange (AO, #A9231) and Propidium iodide (PI, #P4864) were purchased from Sigma; N-Acetyl-L-cysteine (NAC, #47866) and 3-(4, 5-dimethylthiazol-2-yl)-2,5-di-phenyltetrazolium bromide (MTT, #33611) were obtained from SRL; beta-cyclodextrin (β-CD, #C0900), Genistein (Gen, #G0272) and 3-(2-Benzothiazolyl)-7-(diethylamino)coumarin (C6, #B2088) were purchased from TCI Chemicals. FITC conjugated AnnexinV (#A13199), AnnexinV binding buffer (#V13246), LysoTracker Red DND-99 (LT, # L7528), Enhanced Chemiluminescence (ECL, #32106) and Antifade mountant (4ʹ-6-diamidino-2-phenylindole, #P36962) were procured from Thermo Fisher Scientific. Lipofectamine 3000 was from Invitrogen (#L3000-001). Antibodies were obtained from Cell Signalling Technology (CST, USA). GFP-Ub was a gift from Nico Dantuma (Addgene plasmid # 11928).
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3

Nanoparticle Preparation and Cellular Uptake

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Docetaxel was purchased from AK Scientific (Union City, CA, USA). Phospholipids were purchased from Lipoid (Germany). All other chemicals and HPLC solvents were purchased from Sigma-Aldrich (St. Louis, MO). DMEM-F12K medium, fetal bovine serum, and other cell culture materials were purchased from Lonza (Basel, Switzerland). Primary antibodies were purchased from cell signaling technology (USA). 1,2-Dioleoyl-sn-glycero-3-[(N-(5-amino-1-carboxypentyl) imidodiacetic acid) succinyl nickel salt] (DOGS-NTA-Ni) was purchased from Avanti Polar Lipids (Alabaster, AL, USA). The six histidine tagged PEGylated YSA (6His-PEG-YSA) tumor homing peptide and control nonspecific peptide YKA (6His-PEG-YKA) peptide were synthesized by GenScript Corporation (Piscataway, NJ, USA). Chlorpromazine, MβCD, genistein, amantadine, nocodazole, hydroxychloroquine and amiloride were purchased from Santa Cruz Biotechnology, Santa Cruz, CA, USA.
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4

Yeast Cell Cycle Synchronization

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Yeast strains and bacterial plasmids used in this study are listed in Table S1. Yeast strains were based on the W303 or S288C genetic backgrounds of a mating type (Winston et al., 1995 (link)). Yeast‐diluted precultures were grown exponentially for 4–5 generations in YP (1% yeast extract, 2% peptone), or in synthetic complete media (SC; 1.34% yeast nitrogen base, 0.04% complete synthetic mix) supplemented with 2% glucose (YPD or SDC), or 2% galactose (YPG or SGC), aerated by shaking at 30 °C. Yeast cells were arrested in late G1 by treating exponential cultures with 5 μg ml−1 α‐factor (Core Facility, Max Planck Institute of Biochemistry, Martinsried, Germany) for 105 min at 30 °C, or arrested in mitosis by adding 30 µg ml−1 nocodazole for 3 h at 30°C (Santa Cruz Biotechnology; Dallas, TX, USA).
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5

Lipofectamine-mediated Transfection Assay

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Lipofectamine 2000 (Invitrogen) was used to introduce expression vectors and siRNAs into cells. Luteolin and nocodazole were purchased from Santa Cruz and Sigma Aldrich, respectively.
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6

VEGF-Mediated Cytoskeleton Modulation

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Recombinant VEGF165 (VEGF) was obtained from R&D Systems (#293-VE-010 Wiesbaden-Nordenstadt, Germany) and diluted in phosphate-buffered saline (PBS) containing 0.1% bovine serum albumin (BSA). The Rac inhibitor (EHT1864) and microtubule polymerisation inhibitor (nocodazole) were obtained from Santa Cruz Biotechnology (#sc-361175, Heidelberg, Germany) and Sigma (#M1404, Munich, Germany), respectively. Sphingosine-1-phosphate 1 receptor (S1PR1) activator (Sew2871) was provided by Abcam (#ab120983, Cambridge, UK). The γ–secretase inhibitor (GSI-IX, LY-374973, N-[N-(3,5-difluorophenacetyl)-L-alanyl]-S-phenylglycine t-butyl ester, DAPT, #565770), and the ARP2/3 complex inactive inhibitors CK312 (#182518) and CK689 (#182517) and active inhibitor CK666 (#182515) were purchased from Calbiochem (Bad Soden, Germany), and the active inhibitor CK548 was purchased from ChemDiv (#K205-1650, San Diego, USA). Regents were used at concentrations as indicated in the text.
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7

Yeast Strain Characterization Protocol

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All yeast strains used in this study are listed in Supporting Table S1 and derived from the genetic background of W303 (leu2-3, 112 trp1-1 can1-100 ura3-1 ade2-1 his3-11,15) or BY4741 (his3Δ1 leu2Δ0 met15Δ0 ura3Δ0). Gene deletions and epitope-tagging were performed using standard PCR-based methods. Cells were grown in either full (YP; 1% yeast extract, 2% Bacto-Peptone) or synthetic complete (SC; 1.34% yeast nitrogen base, 0.04% complete synthetic mix) medium supplemented with 2% glucose (YPD), 2% raffinose (YPR) or 2% galactose (YPG). Cells were arrested in G1 using 10 µM α-factor (Core Facility, Max Planck Institute of Biochemistry, Martinsried, Germany) or in mitosis using 30 µg/ml nocodazole (Santa Cruz Biotechnology). Mutants were grown at 25 °C to reduce chromosome missegregation. For viability assays cells were grown overnight in full medium, diluted to an OD600 of 0.3 and tenfold serial dilutions were spotted on YPD/YPG plates or on SC plates containing indicated concentrations of benomyl and nocodazole, respectively. The phosphatase inhibitor okadaic acid was used at concentrations of 10 or 20 µM as stated for the individual experiments.
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8

Immortalized Retinal Pigment Epithelial Cell Culture

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Human telomerase-immortalised retinal pigment epithelial cells (hTERT-RPE-1, ATCC) were grown in DMEM-F12 supplemented with 10% FCS (Life Technologies, Paisley, UK). Cell lines were not authenticated after purchase other than confirming absence of mycoplasma contamination. Transfections were performed using Lipofectamine 2000 according to the manufacturer's instructions (Invitrogen, Carlsbad, CA). FLAG–GALNT3 was obtained from ViGene Biosciences (CH897457D) Str-Kdel/Man-SBP-EGFP was a gift from Franck Perez (Institut Curie, Paris; Boncompain et al., 2012 (link)). For drug treatments, cells were incubated with 5 μM nocodazole (Santa Cruz, Heidelberg, Germany) or 5 μM Brefeldin A diluted in growth medium at 37°C then washed three times with growth medium for recovery.
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