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12 protocols using collagenase

1

Lung and Spleen Immune Cell Isolation

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BAL was collected by irrigating lungs via trachea with a syringe containing 1 ml of cold PBS. Lungs and spleen were aseptically removed after BAL lavage and were homogenized and processed for immunological assays. Prior to homogenization, lungs were incubated in digestion medium DMEM (Dulbecco’s Modified Eagle Medium, High glucose NEAA, no glutamine, Gibco) supplemented with collagenase 0.15 mg/ml (Sigma Aldrich) at 37°C for 30 min. Spleens and collagenase-incubated lungs were homogenized and filtered through a 40 μm nylon mesh cell strainer (BD Biosciences, San Diego, CA) to obtain a homogenous cell suspension. BAL, lung and spleen cells were treated with red blood cell (RBC) lysing buffer (0.87% of NH4Cl solution and 5% of PBS in water) for 5 min, and washed twice with DMEM supplemented with 10% of heat-inactivated fetal bovine serum. Leukocyte fraction was isolated by density gradient centrifugation on an 80%/40% Percoll (GE Healthcare, Sigma Aldrich) gradient. In mice sacrificed post-challenge, the left lung and half spleen were reserved for organ CFU count.
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2

Isolation of Primary Osteoblasts and MEFs

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Primary osteoblasts were isolated from calvariae of new born mice. Calvariae were pre-digested with 0.1% collagenase (Wako Chemicals, Osaka, Japan) and 0.1% dispase (Roche Diagnostics, Mannheim, Germany) at 37 °C for 20 min. The primary supernatants were removed and calvariae were further treated with the collagenase/dispase solution for 1 h. Single-cell suspensions were prepared using a cell strainer (70 μm; BD Biosciences, San Diego, CA). For the preparation of MEFs, pregnant mice on day 13.5–15.5 were anesthetized with isoflurane and embryos were separated. After removal of the head and internal organs, the embryos were minced and treated with 0.1% trypsin/EDTA (Sigma-Aldrich) with gentle shaking for 15 min. Single-cell suspensions were prepared using a cell strainer (70 μm).
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3

Isolation and Characterization of Murine Skin Fibroblasts

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In order to obtain murine skin cells, skin was collected from the back and cut into small pieces and treated with 0.1% collagenase (Wako, 032-22364) as described previously68 (link). Following the collagenase treatment, cells were filtered through 70μm cell strainer (BD Biosciences, 352350) and washed with 2% NCS (Gibco, 15070063) containing RPMI1640 (nacalai tesque, 30264-56) medium. Cell sorting was conducted with FACS Aria III. Collected cells were first stained with Fc-block (BD Biosciences, 553141). Cells were then washed and stained with anti-mouse antibodies and 7-AAD. The staining patterns used for skin fibroblasts were CD90.2+ gp38+ CD45neg.
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4

Isolation of Liver Tumor-Initiating Cells

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Tumor-initiating cells (TICs) were isolated from the liver tumors acquired from HCV-NS5A transgenic mice with high cholesterol, high fat diet (HCFD) /Alcohol long-term (12 months) feeding. Tumor samples of liver tumors from mice were prepared immediately after surgical removal by mechanical dissociation, digestion in a mixture of collagenase (BD Biosciences) and dispase (Sigma) mixture, and incubated at 37°C for 2 hours. Single cell suspensions were incubated with CD133 microbeads for 15-30 min at 4°C (Miltenyi) and separated using an auto-MACS device (Miltenyi), according to manufacturer's protocol. Isolated TICs were maintained in Dulbecco’s modified Eagle’s medium nutrient mixture F-12 (DMEM/F12) containing 10% fetal bovine serum (FBS), 1% nucleosides, 1 μM dexamethasone, epidermal growth factor (EGF), 1 μg/ml penicillin, 1 μg/ml streptomycin and 1% nonessential amino acids (NEAA). CD133+ TICs and CD133- control cells were cryo-preserved in 60% FBS, 20% DMEM/F12, and 20% DMSO.
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5

Isolation and Characterization of Vessel-Forming Progenitors

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Human adipose lipoaspirates were obtained after informed consent from female patients (26–54 years old). Fresh lipoaspirates were separated from blood and lipoaspiration fluid were passed through a 100 μm nylon mesh. Solid matter was then resuspended in collagenase digest buffer (2.2mg/ml collagenase II (Sigma) supplemented with 100U/ml DNase (Worthington) in M199 Media (Sigma)), shaken in CERTOMAT® BS-1 Incubation-Shaking Cabinet at 37°C for 30 minutes, sedimented on Histopaque-1119 Density gradient to remove blood and dead cells, washed, and pelleted at 400 x g at 4°C. Cells were then plated on Lonza Endothelial Growth Media and transduced with CMV-GFP expressing lentivirus. Twenty-four hours after transduction, cells were lifted with collagenase, resuspended in staining media (2% FBS in PBS), blocked with rat IgG and stained with fluorochrome-conjugated antibodies against human CD45, Tie2, PDGFRα, and CD31 for FACS on the BD Aria II Flow Cytometer. As with mouse samples, the gating was adjusted based on compensation, FMO controls and, unstained cells. In ischemic rescue studies, 500,000 sorted VSPC1+VSPC2 vessel-forming progenitors were injected around ligated femoral artery of 8–12 weeks old immunodeficient Rag2/gamma(c) knockout male mice.
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6

Isolation of Atrial Endothelial Cells from Pigs

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Atrial tissue was obtained from healthy adult Landrace pigs, and AE cells were isolated by exposure to 0.1% collagenase (BD Biosciences, Bedford, Massachusetts) in E199 medium (Sigma Aldrich, St Louis, Missouri) for 45 min at 37°C. Isolated cells were pelleted, placed on gelatin- and/or fibronectin-coated, 6-well plates in E199 medium supplemented with 20% fetal bovine serum, 1% endothelial cell growth factor (Sigma Aldrich), and incubated at 37°C for a another 6 h. Protocols were approved by the Garvan Institute St. Vincent’s Hospital Animal Ethics Committee.
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7

Primary Hepatocyte Isolation Protocol

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A protocol for primary hepatocyte isolation was performed using Collagenase (BD Biosciences) and gradient centrifugation as adapted from previously published methods (Berry and Friend, 1969 (link); Li et al., 2010 (link)).
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8

Isolation of CD8+ T cells from Diverse Tissues

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Isolation of CD8+ T cells was performed similarly as described31 (link). For isolation of CD8+ T cells from the small intestine intraepithelial lymphocyte (IEL) compartment, Peyer’s patches were removed and the intestine was cut longitudinally and subsequently cut laterally into 0.5–1cm2 pieces that were then incubated with 0.154mg/mL dithioerythritol (DTE) in 10% HBSS/HEPES bicarbonate for 30min at 37°C while stirring. Kidneys, salivary glands, and lungs were cut into pieces and digested for 30min with 100 U/mL type I collagenase (Worthington) in RPMI 1640, 5% FBS, 2mM MgCl2, 2mM CaCl2 at 37°C while shaking. Skin was processed similarly as described32 (link) in which a 2cm2 area of the right flank was excised, pre-digested for 30min at 37°C and then enzymatically digested with 0.7 mg/mL collagenase D. After enzymatic incubations (skin, lungs, kidneys, salivary glands), tissues were further dissociated over a 70μm nylon cell strainer (Falcon). For isolation of lymphocytes, single-cell suspensions were then separated using a 44/67% Percoll density gradient. Spleens and lymph nodes were processed with the frosted ends of microscope slides. Red blood cells were lysed with ACK buffer (140 mM NH4Cl and 17 mM Tris-base, pH 7.4).
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9

Isolation of CD8+ T cells from Diverse Tissues

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Isolation of CD8+ T cells was performed similarly as described31 (link). For isolation of CD8+ T cells from the small intestine intraepithelial lymphocyte (IEL) compartment, Peyer’s patches were removed and the intestine was cut longitudinally and subsequently cut laterally into 0.5–1cm2 pieces that were then incubated with 0.154mg/mL dithioerythritol (DTE) in 10% HBSS/HEPES bicarbonate for 30min at 37°C while stirring. Kidneys, salivary glands, and lungs were cut into pieces and digested for 30min with 100 U/mL type I collagenase (Worthington) in RPMI 1640, 5% FBS, 2mM MgCl2, 2mM CaCl2 at 37°C while shaking. Skin was processed similarly as described32 (link) in which a 2cm2 area of the right flank was excised, pre-digested for 30min at 37°C and then enzymatically digested with 0.7 mg/mL collagenase D. After enzymatic incubations (skin, lungs, kidneys, salivary glands), tissues were further dissociated over a 70μm nylon cell strainer (Falcon). For isolation of lymphocytes, single-cell suspensions were then separated using a 44/67% Percoll density gradient. Spleens and lymph nodes were processed with the frosted ends of microscope slides. Red blood cells were lysed with ACK buffer (140 mM NH4Cl and 17 mM Tris-base, pH 7.4).
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10

Isolating Intrahepatic Lymphocytes from Murine Liver

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Blood was collected and stored in EDTA tubes and treated with red blood cell lysing buffer from BD Biosciences (BD Pharm LyseTM, cat. no.: 5555899) following the producer’s manual and stored on ice for subsequent FACS staining. To obtain IHL, we perfused the liver with PBS, detached the liver and removed the gall bladder. The left liver lobe was placed in HBSS (PAN Biotech, cat. no.: P04-34500) on ice, minced with scissors and digested with 0.2% Collagenase type 4 (Worthington, cat. no.: 4188CL94) for 30 min at 37°C. Collagenase was stopped with flow buffer (PBS/0.5% BSA/2 mM EDTA) and tissue was further homogenized with a syringe and cannula and filtered through a 70 μm cell strainer (Falcon cell strainer 70 μm, Ref. no.: 352350) to gain single cell suspension. After a washing step, the liver cell pellet was dispensed in 8 ml 35% Percoll (GE Healthcare Life Sciences, cat. no.: 17-0891-01) and spun at 700 G for 30 min without brake at room temperature. The lowermost layer was lysed with lysis buffer to get again rid of the red blood cells. After a washing step, cells were distributed among the different FACS tubes.
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