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6 protocols using tcs sp5 x aobs

1

Fluorescent Probe for Biological Imaging

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3-nitro-1,8-napthalimide and formic hydrazide were purchased from Sigma-Aldrich and used as received. The solvents used for synthesis and photophysical studies were of spectroscopic grade. For photophysical studies double-distilled water was used and pH of water was 6.7 and conductivity was 30 dS m−1. For stock solution of all anions tetrabutylammonium salts were purchased and for all cations, chloride salts were used. Bruker DRX-300, Agilent Unity INOVA-500 and Bruker Ascend 500 NMR spectrometer were used for NMR spectral characterization. UV-Vis spectra were obtained using Agilent 8453 UV-Vis spectrometer and Shimadzu UV-2600 spectrophotometer. Fluorescence spectra measurements were obtained from Hitachi F-7000 fluorescence spectrophotometer and Shimadzu RF5301pc spectrofluorophotometer. The potentiometric titration was measured using Bio-logic SP-150 cyclic-voltammeter (CV). Lifetime measurement studies were done at Horiba Delta time instrument coupled with TCSPC. Fluorescent images were taken on a Leica TCS SP5 X AOBS and Leica TCS SP5 II Confocal fluorescence microscope. The cells RAW264.7 were provided by the Food Industry Research and Development Institute (Taiwan). The cell imaging and zebrafish imaging experiments were conducted in strict accordance with the guidelines provided by Govt. of Taiwan and was approved by Institutional committee (NCTU, Taiwan).
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2

Cytotoxicity Assessment of TPE in 3A6 Cells

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The cells were seeded on a 35 mm Petri dish at a density of 5 × 104 cells per well and cultured for 24 h. TPE samples of various concentrations (10–50 μM) were treated with 3A6 cells and incubated for 24 hours. After staining for suitable time, the cells were washed with phosphate-buffered saline for three times (pH = 7.4) and images were acquired using laser-confocal microscope (Leica TCS-SP5-X AOBS).
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3

Fluorescent Probe for H2S Detection

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1-Pyrenecarboxaldehyde and p-toluenesulfonylhydrazide were purchased from Sigma-Aldrich
and used as received. The solvents used for synthesis and photophysical
studies were of spectroscopic grade. For photophysical studies, double-distilled
water was used, and the pH of water was 6.7 and conductivity was 30
dS/m. For the stock solution of all anions, tetrabutylammonium salts
were purchased, and for all cations, chloride salts were used. Sodium
sulfide was used as an H2S donor, purchased from Sigma-Aldrich,
and was used as received. A Bruker DRX-300, an Agilent Unity INOVA-500,
and a Bruker Ascend 500 NMR spectrometer were used for NMR characterization.
UV–vis spectra were obtained using an Agilent 8453 UV–vis
spectrometer. Fluorescence spectra measurements were obtained from
the Hitachi F-7000 fluorescence spectrophotometer. Lifetime measurement
studies were done using the Horiba DeltaTime instrument coupled with
a time-correlated single-photon counting system. Fluorescence images
were taken on a Leica TCS SP5 X AOBS and a Leica TCS SP5 II confocal
fluorescence microscope.
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4

Immunofluorescence Staining Procedure

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The cells were cultured on coverslips, which were kept in a 35 mm Petri dish for 16–20 h before treatment. After treatment with ND or ND-Cet, the cells were washed with isotonic PBS (pH 7.4), and then fixed with 4% paraformaldehyde solution in PBS for 1 h at 37 °C. The coverslips were washed three times with PBS, and non-specific binding sites were blocked in PBS containing 10% FBS and 0.3% Triton X-100 for 1 h. Subsequently, the cells were incubated with specific primary antibodies in PBS containing 10% FBS for overnight at 4 °C. Therefore, the cells were washed three times with 0.3% Triton X-100 in PBS. The cells were incubated with fluorescent secondary antibodies in PBS containing 10% FBS for 2.5 h at 37 °C. The nuclei were stained with Hoechst 33258. The prepared samples were analyzed by Multiphoton and Confocal Microscope System (MCMS) (TCS-SP5-X AOBS, Leica, Mannheim, Germany), TCS SP/SP2 (Leica) confocal laser scanning microscope.
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5

Immunofluorescent Localization of EMILIN-1

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Cells were fixed with 4% paraformaldehyde (PFA, Electron Microscopy Sciences) for 20 min at RT, followed by permeabilization with 0.1% Triton X-100 (Sigma #11332481001) in PBS for 10 min RT. After washing with PBS, to avoid antibody unspecific interactions coverslips were incubated with PBS 5% Donkey Serum (Sigma #D9663), 1% BSA, and 0.05% Triton for 45 min at RT and stained with primary antibody As556 IgG EMILIN-1 (Rabbit Polyclonal from CRO, Italy, 1/2000) 4 °C overnight. Then, samples were rinsed and incubated with an Alexa Fluor 488 conjugated secondary antibody (Donkey, Rabbit IgG #A21206 (Life Technologies), 1/200). 40,6-diamidino-2-phenylindole (DAPI) was used for nuclear staining. Digitalized images were generated using a Leica TCS SP5 X AOBS or Leica TCS SP5 AOBS confocal microscopes (63X HCXPLAPO 1.4 N.A) and analyzed using Fiji software (Open source, https://imagej.net/software/fiji/, accessed on 30 May 2021) [52 (link)].
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6

Spectroscopic Characterization of DNIC Complexes

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All of the EPR measurements were performed
at X-band using a Bruker EMXmicro-6/1/S/L spectrometer equipped with
a Bruker E4119001 super high sensitivity cavity. X-band EPR spectra
were obtained with a microwave power of 0.6456–0.6348 mW, frequency
at 9.41 GHz, conversion time of 66.68 ms, receiver gain of 30, and
modulation amplitude of 10.0 G at 100 kHz. UV–vis spectra were
recorded on a PerkinElmer Lambda 365 spectrometer. Fourier transform
infrared (FT-IR) spectra were recorded using a sealed solution cell
(0.1 mm, CaF2 windows). Reactions of dinuclear DNIC–COOH/DNIC–COOMe with O2 in the presence of DTBP were characterized using
Trace 1300 Gas Chromatograph in combination with a mass spectrometer
with a 5MS column. The confocal microscopic images were recorded using
ZEISS LSM 780 or Leica TCS–SP5-X AOBS confocal microscope systems.
The absorbance of the assay was recorded using a microplate reader
SpectraMax iD3, Molecular Devices, San Jose, CA.
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