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5 protocols using anti ki 67 16a8

1

Synovial Cell Immunophenotyping by Flow Cytometry

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The following antibodies and reagents were used for the analysis of synovial cells with flow cytometry and cell sorting: anti-CD45-APC-H7 (2D1, BD Pharmingen), anti-CD235a-APC-Alexa Fluor750 (11E4B-7-6(KC16), Beckman Coulter), anti-CD31-PE-Cyanine7 (WM-59, eBioscience), anti-CD146-BV450 (P1H12, BD Horizon), anti-CD34-PE (4H11, eBioscience), anti-PDPN-PerCP-eFluor710 (NZ-1.3, eBioscience), anti-THY1-FITC (5E10, BD Pharmingen), anti-cadherin-11-biotin (23C6), human TruStain FcX (BioLegend), streptavidin-APC (Jackson ImmunoResearch), Live/Dead fixable aqua dead cell stain kits (Molecular Probes). For immunofluorescence staining of synovial tissue, following antibodies and reagents were used: anti-CD45 (135-4C5, AbD Serotec), anti-CD34 (EP373Y, Abcam), anti-PDPN (NZ-1.3, eBioscience), anti-THY1 (F15-42-1, Merck Millipore, and clone Thy-1A1, R&D Systems), anti-cadherin-11-Biotin (23C6), anti-Ki67 (16A8, BioLegend), anti-mouse IgG1-FITC (Southern Biotech), anti-mouse IgG2a FITC (Southern Biotech), anti-mouse IgG2b-Alexa Fluor 647 (Life Technologies), anti-rat IgG-Alexa Fluor 594 (Life Technologies), anti-rat IgG-Alexa Fluor 647, anti-rabbit IgG-Alexa Fluor 546 (Life Technologies), Hoechst 33258 (Life Technologies), and anti-FITC Alexa Fluor 488 (Life Technologies).
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2

Multiparametric Flow Cytometry Analysis

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Cell surface marker expression was analyzed on a Becton Dickinson LSR FortessaTM flow cytometer after staining with fluorochrome-conjugated antibodies. Intracellular staining was performed using the fix/perm buffer set (Biolegend), according to the manufacturer's instructions. Antibodies used were conjugated anti-NKp30 (P30–15, Biolegend), anti-NKp44 (P44–8.1, BD), anti-NKp46 (29A1.4, Biolegend), anti-IFN-γ (485.B3, Biolegend), anti-TNF-α (MAb11, eBioscience), anti-RANKL (MIH24, Biolegend), anti-Ki-67 (16A8, Biolegend), anti-CD107a (H4A3, BD), anti-CD57 (HCD57, Biolegend), anti-CD56 (N901, Beckman Coulter), anti-CD14 (HCD14, Biolegend), anti-CD16 (3G8, Biolegend), and anti-CD3 (UCHT1, Biolegend). Annexin V/7-AAD staining was performed according to the manufacturer's protocol (Biolegend). The data were analyzed using FlowJo v10.2 software.
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3

Comprehensive Immune Cell Profiling

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For cell sorting and flow cytometry analysis, cell suspension were prepared as described above, incubated with fixable viability dye and subsequently stained with following fluorophore-conjugated monoclonal antibodies: anti-CD45 (30-F11, BD Biosciences), anti-CD45.2 (104, Biolegend), anti-CD90.2 (thy1.2) (53–2.1, Biolegend), anti-CD3 (17A2, Biolegend), anti-CD4 (Biolegend, RM4–5), anti-CD8 (53–6.7, Biolegend), anti-CD11b (M1/70; Biolegend), anti-CD11c (N418, Biolegend), anti-Ly6C (HK1.4, Biolegend), anti-Ly6G (1A8, BD Biosciences), anti-Siglec-F (E50–2440, BD Bioscience), anti-mouse MHC Class II (I-A/I-E) (M5/114.15.2, eBioscience), anti-NK1.1 (PK136, Biolegend), anti-CD19 (6D5, Biolegend), anti-T1/ST2 (DJ8, MD Biosciences), anti-KLRG1 (2F1, Biolegend), anti-FoxP3 (FJK-16S, eBiosciences), anti-Ki-67 (16A8, Biolegend), anti-Gata3 (TWAJ, eBioscience), anti-IL13 (eBio13A, eBioscience), anti-IFNgR1 (XMG1.2, BD Bioscience).
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4

Immune Cell Profiling of Tumor Samples

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Tumors were dissociated using the MACs mouse tumor dissociation kit (Miltenyl Biotec) and suspended in PBS+1% FBS. The cells were incubated in blocking buffer containing 1:200 CD16/32(clone 93, eBioscience) for 30 min on ice. They were subsequently stained by fluorescent-conjugated primary antibodies at previously validated concentrations for 1 hr on ice. Following three PBS+1 % FBS washes, the cells were resuspended in ice cold PBS or fixed in 1 % PFA for immediate acquisition on the LSR Fortessa at the Baylor College of Medicine FACS and Cell Sorting core. Data was further analyzed using FlowJo Software version 10.0.
The following antibodies against mouse antigens were used: anti-CD3ε (145-2C11), anti-CD4 (GK1.5), anti- CD8 (53-6.7) (all from eBioscience); anti-B220 (RA3-6B2), anti-CD11b (M1/70)), anti-CD45 (30-F11), anti- F4/80 (BM8), anti-Ly6G(IA8)(all from Tonbo); anti-CD127 (SB/199, BD Biosciences), anti-CD44 (IM7, BD Biosciences), anti-CD62L (MEL14, Biolegend), Anti-KI67(16A8, Biolegend), anti-CSF1R(AFS98, Biolegend), anti-KLRG1(2F1, Biolegend).
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5

Multicolor Flow Cytometry Profiling of Immune Cells

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Cells were incubated with anti-CD16/32 (clone: 93) (eBioscience, CA, USA) for 30 min and surface stained with a panel of antibodies at 4°C for 1 h. The following monoclonal antibodies were used in this study: anti-CD11b (M1/70), anti-F4/80 (BM8), and anti-CD169 (SER-4) were purchased from eBioscience, anti-CD45 (clone104) and anti-CD31 (clone390) were purchased from BioLegend (CA, USA), and anti-CD204 (REA148) was purchased from Miltenyi Biotec (Bergisch Gladbach, Germany). For intracellular CD206 staining, the cells were fixed and permeabilized following intracellular staining with anti-CD206 (C068C2, BioLegend, CA, USA) at 4°C for 1 h. For the staining of Ki-67, the cells were stained for surface markers, then fixed and permeabilized for intracellular anti-Ki-67 (16A8, BioLegend) staining using fixation and permeabilization buffers (eBioscience) according to the manufacturer's instructions. For ROS measurement, the cells were incubated with 10 μM Dichloro-dihydro-fluorescein diacetate (DCFH-DA) (Sigma-Aldrich, MO, USA) at 37°C for 20 min. All FACS data were acquired on a FACSCalibur (BD Biosciences) or AriaIII (BD Biosciences) flow cytometer and analyzed using FCS Express V3 and FlowJo 7.6 software.
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