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4 protocols using instantblue coomassie stain

1

Quantifying SOD1 Enzymatic Activity

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SOD1 enzymatic activity was determined using in-gel zymography as previously described57 (link). Briefly, lumbar spinal cord PBS-soluble fractions (2.5 μg) and 100 ng of purified recombinant human SOD1WT protein was separated in 8% native PAGE gels. Subsequently, gels were incubated in 5 mM nitrotetrazolium blue chloride (Sigma-Aldrich) for 20 min with gentle agitation, before incubation in developer solution (10 mM tetramethylethylenediamine and 30 µM riboflavin) for 15 min. Gels were developed by exposure to fluorescent light until sufficient contrast between the achromatic zones and background was achieved and images captured using a calibrated densitometer (GS-900; Bio-Rad, Australia). SOD1 activity was quantified as absorbance of the clear bands using ImageJ software (version 1.48, https://imagej.nih.gov/ij/). Each sample was run in duplicate. To account for equal protein between samples, SOD1 activity was normalised to InstantBlue Coomassie stain (Sigma-Aldrich) from samples run on an adjacent gel.
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2

Purified Protein Analysis by SDS-PAGE and Western Blot

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Purified samples were analysed by SDS-PAGE and western blot. Samples were applied to precast TGX gels (Bio-Rad, Hercules, CA, USA) before staining with InstantBlue Coomassie stain (Sigma-Aldrich) or immediately transferred to PVDF membrane (Bio-Rad) for western blot analysis. Western blots were stained with primary rabbit anti-GNAS (Novus Biologicals, Littleton, CO, USA NBP1-31730), primary mouse anti-His antibody (Qiagen, Hilden, Germany, 34660), secondary goat anti-rabbit 800CW antibody (LI-COR Biosciences, Lincoln, NE, USA, 926–32211), secondary anti-mouse 680CW antibody (LI-COR Biosciences, 926–68070) and an in-house made Alexa Fluor 488 conjugated mouse anti-flag antibody. Western blots were imaged on a Typhoon 5 imaging system (Amersham, Little Chalfont, UK).
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HIV-1 p24 Western Blot Quantification

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LV prep lysates were measured for protein concentration with Pierce BCA Protein Assay Kit (catalog [Cat] #23227) and normalized for loading. Samples were processed with LDS Sample Buffer (Cat #B0007) and Sample Reducing Agent (Cat #B0004). Lysates were run on NuPAGE 10% Bis-Tris Bolt Precast Gel from Invitrogen (Cat #NP0301BOX) and transferred to an activated polyvinylidene difluoride fluorescence (PVDF FL) membrane. Total protein in gel was visualized by InstantBlue Coomassie stain (Cat #ISB1L; Sigma-Aldrich). Total protein on membrane was visualized by Revert Total Protein Stain (Cat #926-11010; Li-Cor). Membranes were incubated with anti-p24 antibody (MAB880-A, clone 7A8.1; Millipore). Membranes were then incubated with a horseradish peroxidase (HRP) secondary or goat anti-mouse IR800 (AC2135; Azure Biosystems) and imaged using the Azure c600 imaging system (Azure Biosystems). Western blot signal quantification was conducted using AzureSpot analysis software (Azure Biosystems).
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4

Affinity-based Protein Complex Purification

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Reactions (20 μl) were set up in RBT buffer with 1 μg His-hQTRT1, 1 μg StrepII-hQTRT2, 25 μM 9-deazguanine and 100 pmol of either aspartyl or arginyl stem loop, and incubated for an hour at 37°C. The samples were mixed with 5 μl of 4× LDS sample buffer (Invitrogen), loaded onto a 10% Bis-Tris gel (Invitrogen) and electrophoresed in 1× MOPS buffer (Invitrogen) at 200 V for 1 h at 4°C. The gel was stained with InstantBlue Coomassie stain (Sigma-Aldrich) for 30 min and washed with distilled water overnight.
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