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22 protocols using ab108341

1

Western Blot Analysis of Prostate Proteins

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The cells were washed with ice-cold PBS three times and lysed with RIPA lysis buffer (Sangon Biotech, China) with a protease inhibitors cocktail (Roche, China). The total protein content in the supernatant was measured by the BCA protein assay kit (Sangon Biotech, China) according to the manufacturer’s instruction. The samples were boiled with SDS-PAGE loading buffer (Solarbio, China). Twenty micrograms of protein was added to each lane, separated in 10% SDS-PAGE, and transferred to polyvinylidene fluoride (PVDF) membranes (Millipore, MA, USA) in a Trans-Blot apparatus (Tanon, China). 5% BSA diluted in TBS-T (0.05% Tween 20 in TBS) was used to block the membranes, and the primary antibodies with optimized concentrations, including AR (1:1000, ab108341, Abcam, USA), Actin (1:1000, D191048, Sangon Biotech, China), PSA (1:1000, 10679, Proteintech, China), were added to the membranes overnight at 4 °C. The membranes were incubated with the corresponding secondary antibodies conjugated with HRP (1:10000, D110011, Sangon Biotech, China) for 1 h at room temperature, and the bands were visualized by an enhanced chemiluminescence detection system.
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2

Protein Extraction and Western Blot Analysis

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Cells were lysed with RIPA buffer (Sigma-Aldrich) with added protease inhibitors (Sigma-Aldrich). Proteins were obtained by centrifugation at 12,500 rpm at 4 °C for 30 min and quantified using an EZQ Protein Quantitation Kit (Life Technologies) according to manufacturer’s instructions. Proteins (30 µg) were separated by electrophoresis on SDS-PAGE (Bio-Rad). SeeBlue Plus2 (Invirogen) was used for sizing and visualization of the gel running pattern and protein transfer. Resolved proteins were transferred on immobilon PVDF membranes (Millipore) at 20 V for 30 min. Membranes were air-dried, wet with methanol, washed with TBS-T and blocked at 4 °C overnight in 1% (w/v) non-fat skimmed milk/TBS-T. Membranes were incubated with antibodies against AR (1:500 ab108341), GABBR1 (1:500 ab75239) from ABCAM, GAPDH (1:20000 5174 s), ENO2 (1:200 9536 s) obtained from Cell Signaling and GRP (1:500 sc-271045) from Santa Cruz Biotechnology at 4 °C overnight.
Blots were then incubated with anti-rabbit secondary antibody (1:5000 ab99697) obtained from ABCAM or anti-mouse secondary antibody (1:300 7076 s) from Cell Signaling conjugated to horseradish peroxidase (HRP) at room temperature (RT) for 2 h. Chemiluminescence signals were detected using ChemiDoc XRS system (BioRad). Western immunoblots were quantified using ImageJ software.
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3

Comprehensive Protein Profiling Protocol

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The following antibodies were used for Western blotting and ChIP: AR (Abcam; ab108341; 1:1,000 for Western blotting), beta-actin (Abcam; ab49900; 1:50,000 for Western blotting), ERG (Abcam; ab92513; 1:1,000 for Western blotting), histone H3 (acetyl K27) (Abcam; ab4729), IRS-1 (Cell Signaling; 2390S; 1:1,000 for Western blotting), IRS-2 (Cell Signaling; 4502S; 1:1,000 for Western blotting), phospho-AKT (Ser308) (Cell Signaling; 13038S; 1:1,000 for Western blotting), phospho-AKT (Ser473) (Cell Signaling; 4060L; 1:1,000 for Western blotting), PTEN (Cell Signaling; 9559L; 1:1,000 for Western blotting), phospho-IGF1R (Cell Signaling; 3024S; 1:1,000 for Western blotting), FKBP5(Cell Signaling; 12210S; 1:1,000 for Western blotting), phospho-Pras40 (Cell Signaling; 2997s; 1:1,000 for Western blotting), phospho-EGFR (Cell Signaling; 3777S; 1:1,000 for Western blotting), phosphor-GSK3B (Cell Signaling; 9336S; 1:1,000 for Western blotting).
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4

ChIP Assay for AR-Mediated Transcriptional Regulation

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The ChIP assay was performed using a SimpleChIP Enzymatic Chromatin IP Kit (CST, 9003) according to the manufacturer’s instructions. LNCaP cells were cultured in phenol red-free medium containing 5% CSS for 72 h, after which DHT (10 nM) or DMSO was added and the cells were cultured for another 24 h. For the assay, 2 × 107 cells were harvested. Briefly, chromatin was crosslinked with nuclear proteins, enzymatically digested with micrococcal nuclease, sonicated, and immunoprecipitated with anti-AR antibodies. Normal IgG included in the kit was used as the negative control for IP. Immunoprecipitates were pelleted with agarose beads, purified, and subjected to qPCR using primers specifically targeting the ARE-centric PAX6 genomic region or the PAX6-binding STAT5A and MET promoter region. The following antibodies were used: AR (Abcam, ab108341). Flag beads (Sigma-Aldrich, M8823) were used in the PAX6 chip experiment to pull down intracellular protein-DNA conjugates after over-expression of the PAX6 plasmid in cells. The ChIP primer sequences used in this study are listed in Supplementary Table S1.
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5

Protein Extraction and Western Blotting

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Protein extraction from cells using RIPA buffer (human cell lines) or hypotonic lysis buffer (RM1) and Western blotting was done essentially as described previously (39 (link)). Primary antibodies used in human Western blotting were: TBK1 (Cell Signaling Technology 3013; RRID: AB_2199749); phospho-Ser172-TBK1 (Cell Signaling Technology D52C2; RRID: AB_10693472); RIG-I (Santa Cruz Biotechnology SC-376845; RRID: AB_2732794); and GAPDH (Millipore MAB374; RRID: AB_347661). Primary antibodies used in murine Western blotting were: AR (Abcam ab108341; RRID: AB_10865716); and GAPDH XP (Cell Signaling Technology D16h11; RRID: AB_10622025). Horseradish peroxidase–conjugated anti-rabbit and anti-mouse IgG secondary antibodies (Dako) were used and immunoreactive bands visualized using Clarity Western ECL Substrate (Bio-Rad).
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6

ChIP and qPCR Assays for FOXA1 and AR

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ChIP assays were performed using a Pierce Agarose ChIP Kit (Thermo Fisher Scientific) according to the manufacturer’s protocol. FOXA1 (Abcam, #ab170933), AR (Abcam, #ab108341), and corresponding control IgG antibodies were used. The qPCR assays were carried out using the chromatin samples as prepared above. The primer sequences are listed in Supplemental Table 1.
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7

Immunohistochemical Analysis of Lung Tissues

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Lung samples from the above mouse studies were fixed in 4% formalin for 24 h, before transfer to 70% alcohol for storage before processing into wax. Sections were probed with anti-Tmprss2 antibody (ab92323, Abcam) and anti-AR (ab108341, Abcam) overnight at 4 °C at a 1:1000 dilution before detection with the Histostain-Plus IHC HRP Kit and DAB (Thermo Fisher).
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8

Comprehensive NSCLC and PCa Tissue Analysis

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Primary patient NSCLC tissue and NSCLC-PDX tissue collected from mouse and rat were fixed in 10% neutral buffered formalin, processed, paraffin embedded, and sectioned. Tissues were stained with H&E, P40, and TTF1. VCaP tumors grown in SCID/NCr mice or SRG rats were collected, fixed in 10% neutral buffered formalin, processed, paraffin embedded, sectioned, and stained for AR (ab108341, abcam) or PSA (A056201-2, Dako). For all staining, tissue slides were incubated with primary antibody overnight at 4°C. DAB substrate was applied followed by counterstaining with hematoxylin. Tissue were stained for H&E by IDEXX or Icahn School of Medicine at Mount Sinai Pathology Core Facility.
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9

Western Blot Analysis of Murine VP Tissue

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Fresh-frozen VP tissues from 12-week-old male FVB mice were sliced on ice with stainless steel disposable scalpels (Fisher Scientific) then homogenized in RIPA buffer (20 mM Tris-HCl pH 7.5, 150 mM NaCl, 1 mM EDTA, 1% TRITON-X) supplemented with phosphatases and protease inhibitors (Mini, Pierce™, Thermo Fisher) using a tissue grinder kit (Kontes). Equal amounts of protein (15 μg; Pierce™ Rapid Gold BCA Protein Assay, Thermo Fisher) were resolved on 8–12% Tris-glycine SDS-polyacrylamide gels and transferred to nitrocellulose blotting membranes (Bio-Rad), following standard procedures. Membranes were probed with the following antibodies according to the manufacturer’s instructions: rabbit monoclonal [Y69] anti-c-MYC (#ab32072, Abcam; dilution 1:1,000), rabbit monoclonal [ER179(2)] anti-AR (#ab108341, Abcam; dilution 1:1,000) or rabbit polyclonal anti-β-Actin (#4967, Cell Signaling Technology; dilution 1:1,000). Densitometry analyses were made with ImageJ (U.S. NIH, Bethesda, MD; http://imagej.nih.gov/ij/). Results were normalized to β-actin and expressed as arbitrary units.
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10

Western Blot Analysis of EMT Markers

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Total proteins were extracted with RIPA lysis buffer (Beyotime, China) and protein concentrations quantified by a BCA assay. Equal amounts of protein were separated by 8–12% SDS-PAGE (Servicebio, China) and transferred onto PVDF membranes (Servicebio, China). After blocking with 5% nonfat dry milk, the membranes were incubated with the following primary antibodies: anti-N-cadherin (ab18203, Abcam, UK), anti-E-cadherin (3195, Cell Signaling Technology, CST, USA), anti-Snail1 (3879, CST), anti-TWIST1 (25465-1-AP, Proteintech, USA), anti-ZIC5 (ARP33669-P050, Aviva Systems Biology, USA; bs-12147R, Bioss, China), anti-β-actin (ab8227, Abcam), anti-β-catenin (51067-2-AP, Proteintech), anti-TCF4 (22337-1-AP, Proteintech), anti-Histone H3 (ab1791, Abcam), anti-Tubulin (2148, CST), anti-AR-V7 (19672, CST), anti-AR (ab108341, Abcam), and anti-GAPDH (ab9485, Abcam). After incubation with suitable HRP-conjugated antibodies, the blots were visualized using an ECL kit (Multisciences, China).
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