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8 protocols using n5413

1

Immunostaining of Neurosphere-Derived Cells

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Passage (P) 2 Hip-NSCs were treated with the thymidine analog BrdU (Sigma-Aldrich, St Louis, MO, USA) at 10 µmol/l upon reaching 50% confluency. A total of 48 h later, the neurospheres derived from the Hip-NSCs were plated on polylysine-treated sterile glass coverslips and incubated at 37°C in 5% CO2 for 2–4 h. Following thorough rinsing with phosphate-buffered saline (PBS), the neurospheres were treated with 2 M hydrochloric acid for 1 h at 37°C and boric acid buffer (pH 8.5) for 10 min at room temperature (RT). BrdU-incorporated cells were visualized by immunostaining. Briefly, cells were incubated with blocking solution 0.3% Triton X-100 containing 1% normal donkey serum (Jackson ImmunoResearch Labortories, Inc., West Grove, PA, USA) for 30 min. Cells were then incubated with a primary antibody mixture of mouse anti-BrdU (1:200; ab8152; Abcam, Cambridge, MA, USA) and rabbit anti-nestin (1:100; N5413; Sigma-Aldrich) for 24 h at 4°C, followed by the secondary antibodies (Alexa Fluor 488-conjugated donkey anti-mouse IgG; 1:1,000; R37114; Alexa Fluor 594-conjugated donkey anti-rabbit IgG; 1:1,000; R37119; both Thermo Fisher Scientific, Inc.) for 4 h at RT. Finally, the immunostained Hip-NSCs were mounted onto glass slides using VECTASHIELD® antifade fluorescence mounting medium (Vector Laboratories, Inc., Burlingame, CA, USA), and observed under a fluorescence microscope.
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2

Nestin Expression Analysis in Differentiated Cells

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Following 9 days of differentiation in vitro, the cultures were trypsinized into single cells and washed once with FACS buffer [PBS plus 1% fetal bovine serum (FBS)]. The cells were fixed in Cytofix™ Fixation Buffer (BD Biosciences, Franklin Lakes, NJ, USA) for 15 min at room temperature. Following 3 washes with FACS buffer, permeabilization was performed using Phosflow™ Perm/Wash Buffer I (BD Biosciences) for 10 min at 4°C. The cells were then incubated with primary antibody against Nestin (1:200; N5413; Sigma-Aldrich, St. Louis, MO, USA) diluted in Phosflow™ Perm/Wash Buffer I for 15 min at 37°C. The cells were washed with FACS buffer 3 times, followed by incubation with secondary antibody (1:500; A11008; Life Technologies, Eugene, OR, USA) in FACS buffer for 15 min at 37°C. The cells were washed and resuspended in PBS. Analyses were performed using an Accuri C6 flow cytometer (BD Biosciences) and FlowJo software.
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3

Stemness Characterization of AD-MSCs

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Anti-nestin and oct4 immunostaining were employed to
identify the stemness of AD-MSCs. Briefly, the cells were
fixed by 4% paraformaldehyde solution for 20 minutes
at room temperature and washed three times in PBS.
[For the BrdU-labeling assay, the cells were fixed using
70% ethanol for 10 minutes, and they were exposed to
2 M of HCl for 1 hour at 37°C. Subsequently, the cells
were incubated in 0.1 M of borate buffer (pH=8.5) for 10
minutes]. Next, the cells were permeabilized with 0.3%
Triton X-100 in PBS for 15 minutes and 10% goat serum
for 15 minutes at room temperature and were allowed to
incubate overnight at 4°C with primary antibodies such
as anti-BrdU primary antibody (1:500; B 2531; Sigma,
USA), anti-nestin (1:500; N5413; Sigma, USA) and
anti-Oct4 [(1:100); ab18976; rabbit anti Oct4 antibody,
Abcam, Cambridge, UK]. Next, the cells were washed
twice in PBS and stained with anti-mouse secondary
antibody Rhodamine-conjugated (1:100; Millipore,
USA, AP124R), fluorescein isothiocyanate (FITC)-
conjugated secondary anti-mouse (1:100) for nestin and
FITC-conjugated secondary anti-rabbit (1:100) for Oct4
at 37°C for 1 hour. Cells were examined by fluorescent
microscope (E600 Eclipse; Nikon, Netherlands) equipped
with a digital camera (DXM 1200; Nikon Digital).
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4

Differentiation of hiPSCs into Cortical Neurons

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Differentiation of hiPSCs towards LCPs and cortical projection neurons (CPNs) was carried as described by Benchoua and colleagues (Boissart et al., 2013 (link)). Briefly, iPSCs colonies were transferred to a non-coated dish with neural induction media (N2B27 with FGF2 and double SMAD inhibition by SB431542 and LDN193189, Stem Cell) for 6 hr and were afterwards transferred onto poly-ornithine and laminincoated dishes. Following neural rosette formation (12 – 15 days), the cells were passaged onto a geltrex-coated (A1413301, Life Tech) flask (LCPs P1) and were further cultured with N2B27 supplemented with FGF2, EGF and BDNF (Stem Cell). SOX2 and Nestin (1:250; N5413, Sigma) staining confirmed LCPs multipotency. Neuroectodermal origin of the emerging neural progenitor-like cells was assessed by HNK1/P75 FACs staining (data not shown). LCPs were further differentiated towards CPNs by growth factor withdrawal for 15 days. Neuronal identity was assessed with Tuj1 (1:2000; T2200, Sigma) staining (data not shown). WB results were replicated with two different clones of control and SRD5A3 mutant hiPSCs.
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5

Immunofluorescence Assessment of Neural Markers

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Evaluation of the specific protein profiles of the differentiated cells carried out by immunofluorescence. The cells of all the samples were fixed in 4% paraformaldehyde and rinsed with PBS. Then, they permeabilized by 0.3% Triton X-100 and incubated with blocking buffer (10% normal goat serum; NGS, Sigma, G9023). The cells subsequently incubated with primary antibodies, including rabbit polyclonal nestin (Sigma, N5413), mouse anti-synaptophysin monoclonal (Abcam, ab8049), mouse anti-β-III tubulin monoclonal (Abcam, ab7751), rabbit anti-tyrosine hydroxylase–neuronal marker (Abcam, ab6211), rabbit polyclonal antibody to GFP (Abcam, Cambridge, USA, ab290), and mouse monoclonal anti-Nurr1 antibody (Abcam, ab41917), each at 1:1,000 dilutions. FITC-conjugated anti-mouse IgG (Sigma, F9137) and Cy5.29-conjugated anti-rabbit IgG (Abcam, ab6564) each at 1:1,000 dilutions applied as secondary antibodies. DAPI (4′,6-Diamidino-2-phenylindole, Sigma, D9542) utilized to counterstain the nuclei.
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6

Pluripotent Stem Cell Characterization

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ALP staining was performed with the ALP substrate (1-step NBT/BCIP; Pierce) after fixation with 4% paraformaldehyde (PFA; MUTO Pure Chemicals, Japan). Immunofluorescence staining was performed using the following primary antibodies: anti-NANOG (RCAB0003P, ReproCELL), anti-OCT3/4 (sc-5279, Santa Cruz), anti-SSEA 3 (MAB4303, Millipore), anti-SSEA 4 (MAB4304, Millipore), anti-Tra-1–60 (MAB4360, Millipore) and anti-Tra-1–81 (MAB4381, Millipore), anti-human smooth muscle actin (IR61161, DAKO), anti-human Sox17 (AF1924, R&D Systems), or anti-Nestin (N5413, Sigma). The fluorescence signals were detect using a conventional fluorescence laser microscope (IX70; Olympus) equipped with a color charge-coupled device (CCD) camera (CS220; Olympus). DAPI (Molecular Probes) and Hoechst (33342; Lonza) were used for nuclear staining. The secondary antibodies used were: anti-rabbit IgG and anti-mouse IgG and IgM conjugated with Alexa Fluor 488 or Alexa Fluor 568 (Molecular Probes).
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7

Immunohistochemical Analysis of Adrenal Gland

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The adrenal sections were cut at 5 µm and processed for Hematoxylin and eosin (Hx&E) staining (Bancroft and Gamble, 2008) . For immunohistochemical staining, the adrenal sections were treated with 3% H2O2 and rinsed in phosphate-buffered saline (pH 7.4), then preserved with sodium citrate buffer (0.01 M, pH 6.0) in a water bath at 95 o C for 30 min. after cooling to the room temperature, the slides were incubated with 1% BSA for 1h and then overnight at 4 o C with the primary antibodies: anti-Nestin antibody (N5413, Sigma-Aldrich, 1:100 dilutions) (Bellafiore et al., 2006; Klein et al., 2014) , Anti-GFAP antibody (ab7260, Abcam, 1:1000 dilutions) (Nedzvetskii et al., 2016) , Antichromogranin-A antibody (A0430, Abcam, 1:1500 dilutions) (Zhang et al., 2018) . The slides were incubated with HRP-conjugated secondary antibodies at 37 o C for 30min, then treated with labeled streptavidin-biotin for another 30min. Finally, the diaminobenzidine was used to visualize the immunohistochemical reactions and the hematoxylin as a counterstain.
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8

Immunofluorescence Staining of Pancreatic Cells

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The primary antibodies used in this study were: anti-nestin (Sigma, N5413), mouse monoclonal proinsulin+insulin, (Abcam, ab8304-50), rabbit polyclonal anti-C peptide (Abcam, ab14181) and mouse monoclonal insulin receptor beta (Abcam, ab8304-100) antibody. Cy5.29-conjugated antirabbit IgG (Abcam, Cambridge, USA, ab6564) and FITC-conjugated anti-mouse IgG (Sigma, St.
Louis, MO, F9137) were used as secondary antibodies. For immunoflourescence, the cells were cultured in six-well plates, fixed and permeabilized. They were then treated by normal goat serum (NGS, Sigma, G9023) to prevent nonspecific binding. Then, the cells were incubated with the primary antibody, and relevant secondary antibody. All of the antibodies were used at 1:1000 dilutions. Glycerol (70%) was used to mount the cover slips. Primary antibody was removed as negative controls for immunostaining.
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