The largest database of trusted experimental protocols

3 protocols using histo clear

1

Immunohistochemical Analysis of CD44 and Nestin in Tumor Samples

Check if the same lab product or an alternative is used in the 5 most similar protocols
Each tumor sample was fixed in formalin and embedded in paraffin. The blocks were sliced into 5 μm-thick sections, which were deparaffinized in Histo-Clear (Cosmo Bio), hydrated in a graded series of alcohol, and subjected to heat-activated antigen retrieval. After blocking endogenous peroxidase activity, the tissue was incubated with CD44 monoclonal antibody (1 : 250, Cell Signaling Technology, number 3570S) for 4 hours at room temperature. Subsequently, the sections were washed and incubated with biotinylated secondary antibody for 30 minutes at room temperature. The reaction complexes were stained with diaminobenzidine and counterstained with hematoxylin.
For double-labeling immunofluorescence, sections were incubated with a mixture of two primary antibodies to CD44 (1 : 250, Cell Signaling Technology, number 3570S) and Nestin (1 : 250, EMD Millipore, ABD69) diluted in Tris-buffered saline containing 0.02% Tween 20 (TBST) and 0.1% bovine serum albumin in a humidified chamber overnight at 4°C. After washing with TBST, sections were treated with Cy3-conjugated anti-rabbit and DyLight 488-labeled anti-mouse IgG secondary antibodies (1 : 1000; Jackson ImmunoResearch, West Grove, PA). Hoechst 33342 (Sigma-Aldrich) was used for nuclear staining. The immunostained specimens were observed with a conventional microscope (BX52; Olympus, Tokyo, Japan).
+ Open protocol
+ Expand
2

Histological Analysis of Intestinal Tissue

Check if the same lab product or an alternative is used in the 5 most similar protocols
The ileum was cut and immersed in 10% formalin for fixation. Serial 8-μm thick transverse sections of the intestine tissue were prepared and mounted on silanized slides. One section was stained with hematoxylin and eosin. The sections were observed using a microscope (AE2000; Shimadzu Rika Co., Kyoto, Japan). The length of the intestinal wall was the average value of five locations selected at equal intervals. The remaining sections were washed with Histo-Clear (Cosmo Bio Co., Ltd., Tokyo, Japan) and deparaffinized. After rehydration, the sections were incubated with L.A.B. Solution (Cosmo Bio Co., Ltd.) for antigen retrieval. Then, the sections were blocked in phosphate-buffered saline (PBS) containing 5% bovine serum albumin (FUJIFILM Wako Pure Chemical Corporation, Osaka, Japan) and incubated overnight at 4°C with primary antibodies against claudin-1 (Thermo Fisher Scientific, Waltham, MA) and occludin (Proteintech, Rosemont, IL). The sections were washed in PBS, incubated with goat anti-rabbit IgG (Thermo Fisher Scientific), and mounted using an antifade mountant (Thermo Fisher Scientific). The sections were observed using a fluorescence microscope (BZ-X800; Keyence, Osaka, Japan). Images were acquired following a unified condition, and the mean fluorescence intensity of the epithelium was quantified using ImageJ software (National Institute of Health, Bethesda, MD).
+ Open protocol
+ Expand
3

Immunohistochemical Expression of CD8 and PD-L1

Check if the same lab product or an alternative is used in the 5 most similar protocols
Immunohistochemical expression of TIMTs markers (CD8 and PD-L1) was investigated in all patients. Each tumor sample was fixed in formalin and embedded in paraffin. The blocks were sliced into 5 μm-thick sections, which were deparaffinized in Histo-Clear (Cosmo Bio), hydrated in a graded series of alcohols, and subjected to heat-activated antigen retrieval. After blocking endogenous peroxidase activity, the tissue was incubated with CD8 (rabbit monoclonal antibody; ab237709; Abcam; ready to use) and PD-L1 (rabbit monoclonal antibody; ab237726; Abcam) antibodies for 4 hours at room temperature. Subsequently, the sections were washed and incubated with biotinylated secondary antibody for 30 minutes at room temperature. The reaction complexes were visualized with diaminobenzidine and counterstained with hematoxylin.
+ Open protocol
+ Expand

About PubCompare

Our mission is to provide scientists with the largest repository of trustworthy protocols and intelligent analytical tools, thereby offering them extensive information to design robust protocols aimed at minimizing the risk of failures.

We believe that the most crucial aspect is to grant scientists access to a wide range of reliable sources and new useful tools that surpass human capabilities.

However, we trust in allowing scientists to determine how to construct their own protocols based on this information, as they are the experts in their field.

Ready to get started?

Sign up for free.
Registration takes 20 seconds.
Available from any computer
No download required

Sign up now

Revolutionizing how scientists
search and build protocols!