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Nile red solution

Manufactured by Thermo Fisher Scientific

Nile Red Solution is a fluorescent dye used for the detection and quantification of neutral lipids and some polar lipids in biological samples. It is a versatile tool for the analysis of lipid content in cells and tissues. The dye exhibits fluorescence upon binding to hydrophobic environments, making it suitable for staining and visualizing lipid-rich structures.

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2 protocols using nile red solution

1

Lipid Quantification in Embryos

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Lipid content in embryos was determined as previously described [50 (link)]. Briefly, putative zygotes (day 1) and expanded blastocyst (days 7 and 8) were collected and washed three times in PBS-PVP. At least two embryos were set aside for negative controls, and the remaining embryos were fixed as described before. Negative control embryos were incubated in 100 μl of 100% ethanol for 30 min to dissolve the lipids present. Following fixation, the remaining embryos were placed into a droplet of Nile Red Solution (Invitrogen Molecular Probes) for 30 min (1 μg/ml dilution). After incubation, embryos were washed with PBS-PVP three times and then nuclei were stained with Hoechst 33342 (1 μg/ml dilution) for 20 min in the dark. Samples were mounted on slides in Slow fade® Gold antifade reagent (Thermo Fisher Scientific) and analyzed by using fluorescence microscopy. Excitation/emission was 350/461 for Hoechst 33342 and 552/636 for Nile Red. ImageJ Software 1.46r (National Institutes of Health) was used to quantify mean intensity units per embryo to estimate the amount of lipids. A total of 230 zygotes (109 control, 120 +FLI) and 223 blastocyst stage embryos (116 control, 106 +FLI) were analyzed across 4 replicates in each experiment.
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2

Fluorescent Fatty Acid Imaging in Cells

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HeLa (ATCC) and COS-7 (ATCC) cells were maintained in DMEM (Invitrogen). Labeled or unlabeled fatty acids (Sigma or Cambridge Isotope Lab) were coupled to BSA (Sigma) in 2:1 molar ratio and added to medium to designated concentration. Four hundred micromolar fatty acid was used, if not specified. The ER is visualized in live cells using CellLight ER-GFP (Thermo Fisher Scientific) according to the manufacturer’s manual. mCherry-Sec61β was a gift from Gia Voeltz, University of Colorado Boulder, Boulder, CO. Transient transfection was done with Lipofectamine 3000 Reagent (Thermo Fisher Scientific). BODIPY 500/510 C1, C12 (BODIPY-C12) (Molecular Probes) was used as a fluorescent fatty acid tracer at 2 μM. Neutral lipid was stained with 1 μM Nile Red solution (Molecular Probes).
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