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9 protocols using bz h4c

1

Cell Colony Formation Assay

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Cells were seeded into laminin-coated 12-well plates in triplicate at a density of 500 cells/well in 2 ml of medium with or without treatment medium. After 120 h, the cell colonies were stained for 15 min with a solution containing 0.5% crystal violet and 25% methanol, followed by three rinses with tap water to remove excess dye. The colony numbers were counted with an all-in-one uorescence microscope (Model BZ-X810, Keyence, Osaka, Japan) and attached software Hybrid Cell Count (BZ-H4C, Keyence).
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2

Quantifying DNA Damage and dsRNA Response in A549 Cells

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A549-Dual cells were grown on four-well chamber slides (Matsunami Glass, SCS-N04) for 24 h before irradiation at a dose of 8 Gy. At 3 h post-irradiation, the cells were fixed with 4% PFA in phosphate-buffered saline (PBS) for 15 min at room temperature, permeabilized with 0.1% Triton X-100 for 5 min, and blocked with 3% BSA in PBS for 30 min at 37 °C. Following overnight incubation at 4 °C with the primary antibodies anti-phospho-H2A.X (Ser139) (CST, #2577) and anti-dsRNA-K1 (CST, 28764), the cells were incubated with a DyLight 488-conjugated donkey anti-mouse IgG secondary antibody (Invitrogen, SA5-10166) for 30 min at 37 °C. The primary and secondary antibodies were diluted 1:100 and 1:250, respectively, in PBS containing 3% BSA. The cells were then mounted with VECTASHIELD mounting medium with DAPI (H1200, Vector Laboratories). Images were obtained with an all-in-one fluorescence microscope (BZ-X800, KEYENCE, Osaka, Japan) equipped with a Plan Apochromat 40x objective (NA0.95, BZ-PA40, KEYENCE, Osaka, Japan). Positive areas and signal intensities were automatically calculated using a hybrid cell count application (BZ-H4C, KEYENCE, Osaka, Japan) in BZ-X Analyzer software (BZ-H4A, KEYENCE, Osaka, Japan).
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3

HLA-A Expression Visualization in HCEn Cells

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HCEn cells were fixed in 4% paraformaldehyde and stained with a mouse anti-HLA-A antibody (BioLegend, San Diego, CA) and made visible with Alexa 555 conjugated secondary antibody (BioLegend). The cells were examined with an all-in-one fluorescence microscope (BZ-X800, Keyence, Osaka, Japan) and analyzed using hybrid cell count software (BZ-H4C, Keyence, Osaka, Japan, https://www.keyence.com/ss/products/microscope/bz-casestudy/?tag_tips=Medical%20/%20Life%20Sciences).
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4

Immunohistochemical Analysis of Skin Biopsies

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Biopsy skin specimens were fixed in 10% formalin and embedded in paraffin. Skin specimens were cut from the tissue block in 4-μm sections and stained with hematoxylin and eosin, anti-CD4 antibodies (Ab; clone EPR6855, Abcam), anti-CD8 Ab (clone C8/144B, Abcam), or anti-CD45RO Ab (clone UCH-L1, Absolute Antibody). Alexa488-conjugated goat anti-mouse IgG Ab (Invitrogen) and Alexa594-conjugated goat anti-rabbit IgG Ab (Invitrogen) were used as secondary antibodies. Fluorescent images were obtained using BZ-X810 (Keyence). The number of cells was determined with the cell count software BZ-H4C (Keyence).
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5

Quantitative Skin Graft Inflammation

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The skin specimens were fixed with 4% paraformaldehyde, dehydrated, and embedded in paraffin. The specimens were cut into 4 µm sections. Slides containing fixed tissue were stored in 70% ethanol prior to processing and staining with H&E. A microscope (Keyence 800) was used to assess inflammation of the skin graft. The percentage of inflammatory cells in the sections was automatically calculated using a hybrid cell count application (BZ-H4C, KEYENCE, Osaka, Japan) with BZ-X Analyzer software (BZ-H4A, KEYENCE).
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6

Quantifying Lipid Accumulation in Macrophages

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M0 and M2c macrophages were incubated with oxLDL at various concentrations for 24 h and stained with Oil Red O solution (ORO) (ScyTek Laboratories; Logan, UT, USA) as per manufacturer’s protocol. Cells were observed using a fluorescence microscope (model BZ-X800; Keyence; Osaka, Japan) equipped with 40× objective lens, and lipid droplet area was calculated using software program BZ-H4C (Keyence). Data were expressed as ratio of lipid droplet area to cell number in 10 randomly selected fields. Lipid quantity was determined using a microplate reader (2030 ARVO X4; PerkinElmer Japan; Tokyo) to measure absorbance at wavelength 490 nm of isopropanol-extracted supernatants from ORO-stained cells.
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7

TRPV4 Immunohistochemical Localization in Tissues

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Dewaxed paraffin sections were placed in a microwave (10 min, 600 watts) to recover antigens before staining. The tissue samples were probed with rabbit polyclonal anti-TRPV4 antibodies (ab94868, Abcam, Cambridge, UK; 1 : 500) overnight at 4°C. On the next day, peroxidase-conjugated streptavidin was used with 3,3-diaminobenzidine tetrahydrochloride (DAB; Biocare Medical, Concord, CA, USA) for antibody detection. Hematoxylin was used for nuclear counterstaining. Renal tissue sections were used as positive controls for TRPV4-immunostaining, whereas negative controls were stained without the primary antibody. Images of the stained slides were captured using a BZ-X710 fluorescent microscope (Keyence Corporation, Osaka, Japan). We quantified the stained areas using hybrid cell count software (BZ-H4C, Keyence Corporation, Osaka, Japan) (see Figures 1(b) and 1(c)).
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8

Immunofluorescence Analysis of Salivary Gland

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SMGs obtained from MyhCreER:tdTomatofl/fl mice or SMG organ cultured tissues were fixed in 4% paraformaldehyde (Wako) at 4 °C for 1 h, followed by cryopreservation with sucrose (Wako). The cryosections (4 μm) were prepared and subjected to immunofluorescence using anti-mouse antibodies against FoxO1 (1:50; #2880; Cell Signaling Technology, Danvers, MA) and E-cad (1:100; #610181; BD Biosciences, Franklin Lakes, NJ), Eda (1:100; #PA5-72840; Invitrogen), Eda2r (1:100; #BS-7111R; Bioss), and phospho-NF-κB p65 (1:100; #3033; Cell signaling) overnight at 4 °C, followed by incubation with Alexa Fluor secondary antibody (1:200; Invitrogen) for 1 h at room temperature. Nuclei were counter-stained with DAPI (Dojindo, Kumamoto, Japan). Images were captured using a BZ-9000 fluorescence microscope (Keyence, Tokyo, Japan). FoxO1-positive areas were counted using a hybrid cell count application (BZ-H4C, Keyence) in BZ-X Analyzer software (BZ-H4A, Keyence).
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9

Cell Cycle Analysis Using Biocolor Assay

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Cell cycle distribution was analyzed using the Biocolor Cell-Clock Cell Cycle Assay (Carrickfergus, UK) according to the manufacturer's instructions. OVISE cells were seeded into 24-well plates at a density of 1.2 × 10 4 cells per well and incubated for 24 h and treated with PTX, RO-3306, or siRNA transfection at the indicated time and dosing schedule. Photographic images of cells were obtained from at least three fields per well using a fluorescence microscope (BZ-X800, Keyence, Osaka, Japan). The cell cycle phase was quantified using the BZ-H4C and the BZ-H4CM applications (Keyence). Data were collected as the average ratio of cell cycle distribution of each group and presented as mean ± SD. Each experiment was repeated at least two times.
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