The largest database of trusted experimental protocols

7 protocols using p np acetate

1

Kinetic Analysis of Lipase Mutants

Check if the same lab product or an alternative is used in the 5 most similar protocols
The standard reaction was carried out with the appropriate amount of purified PE8 or its mutants in 1 ml mixtures containing 100 mM Tris-HCl (pH 7.5) buffer and 1 mM p-NP acetate (Sigma-Aldrich, Milwaukee, WI, USA, dissolved in acetonitrile)18 (link). The activities were determined at 30 °C and 405 nm using a DU800 UV/Visible spectrophotometer (Beckman, Houston, TX, USA). All experiments were performed in triplicate and corrected for substrate autohydrolysis. Substrate specificity assays were performed with p-NP acetate, p-NP butyrate (Sigma-Aldrich), p-NP hexanoate (TCI, Tokyo, Japan) and p-NP octanoate (Sigma-Aldrich).
The kinetic parameters were obtained using p-NP acetate as a substrate at different concentrations (0.05 to 4 mM). The kinetic parameters were calculated by analyzing the slopes of the Michaelis-Menten equation using GraphPad Software (GraphPad Inc., USA).
+ Open protocol
+ Expand
2

Characterization of MZ0003 Esterase Activity

Check if the same lab product or an alternative is used in the 5 most similar protocols
Standard conditions: unless otherwise indicated, MZ0003 activity was measured at 405 nm for 20 minutes in a spectrophotometer (SpectraMax Me2, Microplate reader, Molecular Devices, Sunnyvale, CA, USA). Reaction mixture (100 μl) contained 3.5 μg of enzyme, 0.1 M Tris-HCl buffer (pH 8.0) and 1 mM p-NP acetate (Sigma) as substrate dissolved in 100% acetonitrile. Enzymatic activity was assayed in triplicate with an appropriate blank for the correction of the auto hydrolysis of the substrate. One unit of enzymatic activity was defined as the amount of protein that released 1 μmol of p-nitrophenoxide/min from p-NP esters. Molecular coefficient extinction of 18,000 M-1 cm-1 was used for the calculation.
MZ0003 esterase activity was determined towards the acyl chain length of different p-NP esters, dissolved in 100% acetonitrile and purchased from Sigma-Aldrich: p-NP acetate, p-NP butyrate and p-NP octanoate, in the standard assay conditions mentioned in the enzyme activity assay paragraph.
Kinetic parameters were calculated for p-NP acetate using a concentration range of 0 to 4.5 mM in presence of 10 μg of enzyme and 0.1 M Tris-HCl pH 8.0. Initial velocities were calculated with the SoftMax Pro software (Molecular Devices) and then data were fitted with the enzyme kinetic analysis module of Sigmaplot 12.5 (Systat Software, Inc., San Jose, CA).
+ Open protocol
+ Expand
3

Esterase Activity Assay for BCoV-HE-Fc

Check if the same lab product or an alternative is used in the 5 most similar protocols
Esterase activity was measured in a total volume of 100 μl containing 15 pmol protein (BCoV-HE-Fc, sCASD1-wt or BSA), 1 mM pNP-acetate (Sigma Aldrich), 50 mM sodium phosphate pH 6.5 and 50 mM KCl. Samples were incubated for 30 min at RT and the absorbance of released pNP was measured at 405 nm.
+ Open protocol
+ Expand
4

Lipase Substrate Specificity Assay

Check if the same lab product or an alternative is used in the 5 most similar protocols
The substrate specificity of the lipase was assayed by incubating the purified enzyme with 0.75 mM pNP derivatives having different carbon chain-length fatty acids (pNP-acetate, -propionate, -butyrate, -valerate, -caproate, -caprylate, -decanoate, -dodecanoate, and pNPP; Sigma-Aldrich) in 50 mM sodium phosphate buffer (pH 6.8) for 30 min at 25 °C. The hydrolysis of the substrates was estimated by measuring the liberated p-nitrophenol. The relative rate of hydrolysis was determined as percentages of the activity obtained with pNPP.
+ Open protocol
+ Expand
5

Enzymatic Activity of Est10 on pNP Esters

Check if the same lab product or an alternative is used in the 5 most similar protocols
Six p-nitrophenyl (pNP) esters of fatty acids with different chain lengths were obtained from Sigma-Aldrich: pNP acetate (C2), pNP butyrate (C4), pNP decanoate (C10), pNP dodecanoate (C12), pNP myristate (C14) and pNP palmitate (C16). Each enzymatic reaction contained 100 mM sodium phosphate buffer pH 8.0, 4 mg/ml Triton, 0.8 mM of each pNP ester dissolved in acetonitrile:isopropanol mix (80:20 v/v) and 50 nM of purified Est10.
One unit of enzyme activity (U) was defined as the amount of enzyme required to release 1 μmol of p-nitrophenol per minute. The production of p-nitrophenol was continuously monitored at 405 nm in a Varioskan Flash (Thermo Scientific) during 15 min at 40°C. The activity of the enzyme was calculated by measuring the initial reaction rate. The data were collected in triplicates and a blank reaction without enzyme was included for each substrate.
+ Open protocol
+ Expand
6

Surface Display of IsPETase Variants

Check if the same lab product or an alternative is used in the 5 most similar protocols
20 µL whole cells (OD630 = 0.1) displaying IsPETase variants on the cell surface, supernatant of washed cells after TEV cleavage, and purified IsPETase (0.1 µg/mL) were incubated with 1 mM pNP-acetate or pNP-butyrate (Sigma-Aldrich) in 50 mM phosphate buffer (pH 7) for 5 min at 24 °C. The release of pNP was monitored at a wavelength of 405 nm in a SynergyH1 plate reader (BioTek). For pNP-acetate assays on whole cells, E. coli BL21(DE3) cells not harbouring any of the surface-display expression vectors were used as negative control (NC). Since His-tag purified IsPETases were stored in 50 mM HEPES buffer (pH 8), the same buffer was respectively used as negative control for the pNP-acetate assay on purified enzymes.
+ Open protocol
+ Expand
7

Lipolytic Activity of Aryl Esters

Check if the same lab product or an alternative is used in the 5 most similar protocols
Hydrolysis of aryl esters with different chain-length acids was studied by incubating the purified enzymes (10 U/ml) in 0.1 M sodium phosphate buffer (pH 6.8) containing 0.75 mM aryl-esters (pNP-acetate, pNP-propionate, pNP-butyrate, pNP-valerate, pNPcaproate, pNP-caprylate, pNP-decanoate, pNP-dodecanoate, and pNPP; Sigma-Aldrich, USA) at the optimal temperature of the lipolytic activity for 30 min. Then, the activities were examined by measuring the liberated p-nitrophenol at 405 nm. The relative rate of hydrolysis was determined as percentages of the initial rate of hydrolysis obtained with pNPP.
+ Open protocol
+ Expand

About PubCompare

Our mission is to provide scientists with the largest repository of trustworthy protocols and intelligent analytical tools, thereby offering them extensive information to design robust protocols aimed at minimizing the risk of failures.

We believe that the most crucial aspect is to grant scientists access to a wide range of reliable sources and new useful tools that surpass human capabilities.

However, we trust in allowing scientists to determine how to construct their own protocols based on this information, as they are the experts in their field.

Ready to get started?

Sign up for free.
Registration takes 20 seconds.
Available from any computer
No download required

Sign up now

Revolutionizing how scientists
search and build protocols!