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9 protocols using cd27 apc h7

1

Isolation of Influenza-specific Plasmablasts

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We collected blood from three individuals (Suppl. Table 1) vaccinated 7 days earlier with the 2010/2011 seasonal trivalent influenza vaccine (Sanofi Pasteur), which consists of 3 strains of inactivated influenza: H1N1 A/California/7/2009, H3N2 A/Perth/16/2009, and B/Brisbane/60/2008. Samples were collected after obtaining informed patient consent and under human subject protocols approved by the Investigational Review Board (IRB) at Stanford University. PBMCs were stained with CD3-V450 (BD 560365), IgA-FITC (AbD Serotec STAR142F or Miltenyi #130-093-071), IgM-FITC (AbD Serotec STAR146F), IgM-APC (BD 551062) or IgM-PE (AbD Serotec STAR146PE), CD20-PerCP-Cy5.5 (BD 340955), CD38-PE-Cy7 (BD 335808), CD19-APC (BD 340437) or CD19-Brilliant Violet 421 (Biolegend 302233), and CD27-APC-H7 (BD 560222). We sorted cells with a BD FACSAria II or III, achieving purities of >80% from the first bulk sort. We gated on CD19+CD20CD27+CD38++IgAIgM cells for the bulk plasmablast sort, and then single-cell sorted them into 96-well PCR plates containing a hypotonic buffer (10mM Tris-HCl pH 7.6) comprised of 2 mM dNTPs (NEB), 5 μM oligo(dT)20VN, and 1 unit/μL of Ribolock (Fermentas), an RNase inhibitor.
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2

Peripheral B-cell Phenotyping by Flow Cytometry

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Peripheral B-cell phenotyping was conducted using flow cytometry. 20 µl of normal serum mix consisting of mouse and goat serum (Dako) were pipetted in each FACS vial with the cell suspension, mixed well, and incubated for 10 minutes at room temperature in the dark. Subsequently, 39.5 µl of an antibody mix made of IgD FITC, CD21 PE, CD5 Per-Cy5.5, CD38 PE-Cy7, IgM APC, CD27 APC-H7, CD19 AmCyan (BD Biosciences, San Jose, California, USA), and CD24 Pacific Blue (EXBIO Praha, Vestec u Prahy, Czech Republic) were pipetted into the vials and mixed well. After another 15 minutes of incubation as described above, lysis buffer (BD Biosciences, San Jose, California USA) was added and the vials were incubated for another 10 minutes. After centrifugation at 250×g for 5 minutes, the supernatant was poured off and cells were suspended in 3 ml of PBS and mixed. After another round of washing the supernatant was discarded and the cell pellet was loosened and fixed by adding 250 µl of PBS with 1% formaldehyde. After fixation, measurement was carried out using a FACS Canto II and analyses were performed with BD Facs Diva.
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3

Multiparametric Flow Cytometric Immunophenotyping

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Peripheral blood mononuclear cells were washed in PBS with 1% BSA (bovine serum albumin) and incubated for 30 min at 25°C with fluorescently labeled antibodies specific for B and T cells. Subsequently, samples were centrifuged and resuspended in propidium iodide (PI) solution (1 μg/ml PI and 10 μg/ml RNase A in PBS) and analyzed using BD FACS Canto II flow cytometer (BD Biosciences). The B cell panel included the following antibodies: IgA FITC, IgD PE, CD3 PerCP-Cy5.5, CD27 APC-H7, CD19 PE-Cy7, β7 APC, and CD38 BV421 from BD Biosciences. The T cell panel included the following antibodies: CXCR5 BV421, CXCR3 PE, CD4 APC-H7, CD3 FITC, CD196 APC, CD279 (PD-1) BV510, and CD45RA PE-Cy7 from BD Biosciences. Results were analyzed using FACSDiva software (BD Biosciences) and reported as MFI, reflecting the levels of cell surface antigens and relative cell count with respect to hierarchically higher cell populations (%). Cellular aggregates were eliminated using morphology parameters (FSC-A and FSC-H) (see Supplementary Figures 1, 2 for gating strategy).
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4

Comprehensive Immune Cell Profiling

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The following antibodies were used: CD4-AlexaFluor 700, CXCR5-Biotin, ICOS-PECy7, Bcl-6-AlexaFluor 647, CD27-APCH7, CD45RA-PE, CD19-APC or V450, IgD-FITC, IL-21-AlexaFluor 647, IFN-γ-PECy7, IL-10-PE, Streptavidin-PE-TexasRed (BD Biosciences), CD38-PerCPeFluor710, IL-6-FITC, (Biolegend). Neutralizing antibodies specific for human IL-6 and IL-21R and isotype controls from R&D Systems.
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5

Phenotypic Profiling of B cells

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At indicated times post-infection a proportion of lymphocyte cultures representing ~200,000 cells were pelleted at 400g for 3 minutes into 96-well round bottom plates. Cells were washed once with PBS and resuspended in 200μl PBS containing (0.4ng/ml) fixable viability stain (BD Cat# 564406) and incubated at room temperature for 10 minutes. Cells were pelleted and resuspended in 100μl cold PBS without calcium and magnesium containing 5% FBS, and 0.1% Sodium Azide (FACS Block) and incubated on ice for 15 minutes after which 100μl cold PBS containing 0.5% FBS and 0.1% Sodium Azide (FACS Wash) was added. Cells were pelleted and resuspended in FACS Wash containing B cell phenotype panel as follows for 15 minutes on ice: (volumes indicated were routinely used for up to 0.5(10)^6 cells and were based on titration of the individual antibodies on primary tonsil lymphocyte specimens) Ig Lambda Light Chain-V450 (2μl), CD19-PE (8μl), CD38-PECy7 (3μl, BD Cat# 560667), IgD-PerCP Cy5.5 (2.5μl, BD Cat# 561315), CD138-APC (4μl, BD Cat# 347207), CD27-APC H7 (2.5μl BD Cat# 560222), Ig Kappa Light Chain-Alexa700 (2μl). After incubation, 100μl FACS Wash was added and pelleted lymphocytes were washed with a further 200μl of FACS Wash prior to being resuspended in 200μl FACS Wash for analysis. Data was acquired on a BD LSR2 Flow Cytometer and analyzed using FlowJo software.
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6

Comprehensive Immune Cell Profiling

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Frequencies of activation (HLA-DR, CD38 and CCR5) and maturation (CD27 and CD45R0) markers were determined in fresh, anti-coagulated whole blood at each of the two time points. Blood samples were incubated for 10 minutes with CCR5 PECy7 followed by 30 minutes incubation using the following fluorochrome labeled monoclonal antibodies for cell surface staining (mABs); CD3-Pac Blue (BD), CD4 Per-CP Cy5.5 (eBioscience), CD8 V500 or CD8 Amcyan, CD27 APC-H7, CD45RO APC, HLA-DR FITC and CD38 PE (all from BD). Stained cells were finally fixed with 2% paraformaldehyde prior to acquisition. Acquisition was performed on a FACS CANTO II (BD). Compensation was conducted with antibody capture beads (BD) stained separately with the individual antibodies used in the test samples. Flow cytometry data was analyzed using FlowJo (version 9.5.3; Tree Star Inc.). Depending on the expression of CD27 and CD45RO markers on CD4 and CD8 T cells; T cell subsets were defined as follows: naïve (CD27+CD45RO), “central-like” memory (CD27+CD45RO+), “effector-like” memory (CD27CD45RO+) and “terminally differentiated” (CD27CD45RO) CD4 and CD8 T cells. In addition, total memory CD4 T cells were defined as the sum of central memory, effector memory and terminally differentiated CD4 T cells.
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7

Profiling T Cell Subsets by Flow Cytometry

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Frequencies of activation (HLA-DR, CD38) and maturation (CD27, CD45RO) markers on CD4 and CD8 T cells were determined as previously described [21 (link)] in fresh, anti-coagulated whole blood. CD4pos T lymphocytes were classified as “naïve” (CD27posCD45ROneg), ‘‘central memory-like" (CD27posCD45ROpos) and effector memory (CD27negCD45ROpos) CD4 T cells. Gating strategies are given in the supplement. Blood samples were incubated for 10 minutes with CCR5 PECy7 (natutec, Frankfurt, Germany) followed by 30 minutes incubation using the following fluorochrome labeled monoclonal antibodies for cell surface staining (mABs): CD3 Pac Blue (Becton Dickinson; New Jersey, USA), CD4 Per-CP Cy5.5 (eBioscience, San Diego USA), CD8 V500 or CD8 Amcyan, CD25 phycoerythrin (PE)-Cy7 (eBioscience), CD27 APC-H7, CD45RO APC, HLA-DR FITC and CD38 PE (all from BD). Intracellular forkhead-box-protein P3 (FoxP3) was detected using FoxP3-Alexa Fluor 647 (ebioscience). Stained cells were then finally fixed with 2% paraformaldehyde prior to acquisition. Acquisition was performed on a FACS CANTO II (BD). Compensation was conducted with antibody capture beads (BD) stained separately with the individual antibodies used in the test samples. Flow cytometry data was analyzed using FlowJo (version 9.5.3; Tree Star Inc.).
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8

Characterization of T Cell Activation and Maturation

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The proportion of T cells expressing activation (HLA-DR and CD38) and maturation (CD27 and CD45R0) markers was determined in fresh, anti-coagulated whole blood as previously described [25 (link)]. Briefly, fresh blood samples were incubated for 30 min using the following fluorochrome-labelled monoclonal antibodies (mABs): CD3-Pacific Blue (BD), CD4 Per-CP Cy5.5 (eBioscience), CD8 V500 or CD8 Amcyan, CD27 APC-H7, CD45RO APC, HLA-DR FITC and CD38 PE (all from BD). Acquisition was performed on a FACS CANTO II (BD). Compensation was conducted with antibody capture beads (BD) stained separately with the individual antibodies used in the test samples. Flow cytometry data was analysed using FlowJo (version 9.5.3; Tree Star Inc.).
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9

Isolation and Analysis of IgG+ Plasmablasts from S. aureus Bacteremia Patients

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Blood was collected from individuals with culture-confirmed S. aureus bacteremia after obtaining informed consent and under human subject protocols approved by the Investigational Review Board at Stanford University. For all individuals, blood specimens were obtained within 24 hours after the initiation of standard-of-care antibiotic treatment. PBMCs were isolated using a Ficoll layer and stained with CD3-V450 (BD 560365), IgA-FITC (AbD Serotec STAR142F or Miltenyi #130-093-071), IgM-FITC (AbD Serotec STAR146F), IgM-APC (BD 551062) or IgM-PE (AbD Serotec STAR146PE), CD20-PerCP-Cy5.5 (BD 340955), CD38-PE-Cy7 (BD 335808), CD19-APC (BD 340437) or CD19-Brilliant Violet 421 (Biolegend 302233), and CD27-APC-H7 (BD 560222). IgG+ plasmablasts were gated on CD19+/intCD20-CD27++CD38++IgA-IgM- cells and individually sorted using a BD FACSAria III into a 96-well PCR plate containing a hypotonic lysis buffer (10mM Tris-HCl pH 7.6) containing 2 mM dNTPs (NEB), 5 µM oligo(dT)20VN, and 1 unit/µL of Ribolock (Fermentas), an RNase inhibitor.
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