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Polyvinylidene difluoride pvdf membrane

Manufactured by Bio-Rad
Sourced in United States, Germany, China, Spain

Polyvinylidene difluoride (PVDF) membranes are a type of laboratory equipment used for protein transfer and analysis. They provide a stable and durable surface for binding and immobilizing proteins during Western blotting and other related techniques.

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268 protocols using polyvinylidene difluoride pvdf membrane

1

Protein Extraction and Analysis Protocol

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To extract the proteins from the cells, the cells (20 mg) were suspended in 200 μL of 8 M urea sonicated with a probe-type sonicator on ice. The sonication conditions were as follows: power, 45%, and duration, 60 min, with cycles of 1 min on and 1 min off. The protein concentration was measured with a NanoDrop spectrophotometer (Thermo Scientific), and 100 μg of protein was subjected to 10% SDS-PAGE. The proteins were transferred to polyvinylidene difluoride (PVDF) membranes (Bio-Rad, Shanghai). Mouse anti-FLAG (Transgen), mouse anti-GFP (Transgen), or anti-actin antibody (Novus) was used as the primary antibody at a 1:5,000 dilution. Goat anti-mouse IgG-horseradish peroxidase (HRP; Transgen) was used as a secondary antibody at a 1:5,000 dilution. Clarity Western ECL substrate (Bio-Rad) was used to display the bands, and Image Quant LAS 4000 (GE Healthcare) was used to acquire the images.
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2

Investigating PC12 Cell Oxidative Stress

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PC12 cells (rat pheochromocytoma cells) were obtained from Interlab Cell Line Collection, Genova, Italy. RPMI 1640 medium, horse serum, fetal bovine serum, penicillin and streptomycin were obtained from Invitrogen Life Technologies (Carlsbad, CA, USA). Dimethyl sulfoxide, rotenone, curcumin, 3-(4,5-di- methylthiazol-2-yl) -2,5-diphenyltetrazolium bromide (MTT), 2′,7′-dichlorodihydro fluorescein diacetate (DCFH-DA), trichloroacetic acid (TCA), 2,4-dinitrophenylhydrazine (DNPH) and Coomassie blue G250 were purchased from Sigma-Aldrich (St. Louis, MO, USA). Then, 2,4-dinitrophenol (DPN)-antibody was obtained from Molecular Probes (Eugene, OR, USA). Anti-Nitrotyrosine Antibody Merck Millipore (Billerica, Massachusetts, USA) Protein assay reagent, ECL system (Clarity-Western ECL Blotting Substrates) and polyvinylidene difluoride (PVDF) membranes were purchased from Bio-Rad (Hercules, CA, USA). The Proteasome Activity Fluorometric Assay Kit was purchased from BioVision Incorporated (Milpitas, CA, USA).
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3

Western Blot Analysis of Protein Samples

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RAW 264.7 cells were rinsed twice with ice-cold PBS and lysed in RIPA buffer (Thermo Fisher Scientific) with phosphatase and protease inhibitor cocktail (Sigma-Aldrich). It was stored on ice for 5 min and centrifuged at 12,000 rpm at 4℃ for 15 min. After centrifugation, the supernatant was collected, and the protein concentration was measured by a BCA assay kit (Thermo Fisher Scientific). About 20 µg of protein samples was separated using SDS-PAGE analysis with 4–12% Bolt Bis-Tris gel (Thermo Fisher Scientific). The separated protein bands were then transferred onto polyvinylidene difluoride (PVDF) membranes (Bio-Rad Laboratories, USA) at room temperature for 1 h. The membranes were incubated with rabbit primary antibodies (Table S1) overnight at 4℃. After antibody hybridization, the membranes were washed four times with TBST (25 mM Tris HCl, 0.15 M NaCl, and 0.05% Tween 20) to remove all excess primary antibodies and incubated again with anti-rabbit horseradish peroxide conjugated secondary antibodies (1:5,000 dilution, Cell Signaling, USA) at room temperature for 1 h. The target protein was visualized and detected with enhanced chemiluminescence (ECL) reagent (Enzynomics, South Korea) using the Davinci-Chemi Imaging System (Davinci-K, South Korea).
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4

Endostar Modulates Wnt/β-catenin Signaling

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We further analyzed the effects of Endostar on Wnt/β-catenin signaling pathway. HUVECs were incubated in ECM (5% FBS, 1% ECGS) with different concentrations of Endostar (50, 100 and 150 µg/ml) for 24 hours. The whole-cell extracts and the nuclear extracts were each prepared using RIPA buffer (Beyotime, China) and NE-PER nuclear and cytoplasmic extraction reagents (Thermo Scientific, USA) respectively. Proteins were separated by polyacrylamide gel electrophoresis and transferred to polyvinylidene difluoride (PVDF) membranes (Bio-Rad, USA). The membranes were incubated with primary antibodies anti-β-catenin, anti-VEGF, anti-cyclin D1, anti-β-actin and anti-Histone H3 followed by the addition of secondary antibody (Goat anti-rabbit or mouse IgG (H+L) antibody, KPL, USA). Protein bands were detected with an enhanced chemiluminescent substrate (EZ-ECL, Biological Industries, Kibbutz Beit-Haemek, Israel), scanned, and quantitated by a Bio-imaging analyzer (Bio-Rad).
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5

Protein Expression Analysis via Western Blot

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YYJ extract-treated cells were lysed in lysis buffer (50 mM Tris-HCl, 150 mM sodium chloride, 0.5% NP-40, 0.5% Triton X-100, 0.1% sodium deoxycholate, and 1 mM ethylenediaminetetraacetic acid) on ice for 40 minutes. The mixture was centrifuged at 12,000g for 20 minutes at 4°C. The cell lysates were separated by 4% to 20% sodium dodecyl sulfate polyacrylamide gel electrophoresis (SDS-PAGE), transferred to polyvinylidene difluoride (PVDF) membranes (Bio-Rad, Hercules, CA, USA), and incubated with the appropriate antibody, such as iNOS, COX-2, p-IκB, p-nuclear factor-kappaB (NF-κB), NF-κB, p-c-Jun N-terminal kinases (p-JNK), p-Akt, p-p38, p-extracellular-signal-regulated kinase (p-ERK), and β-actin (Abcam). Immunodetection was performed using an enhanced chemiluminescence detection kit (Pierce, Rockford, IL, USA); the immune-signals were captured using the ChemiDoc image detector (Bio-Rad).
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6

Protein Extraction and Western Blotting

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Tissues were lysed in ice-cold Pierce IP lysis buffer (Thermo Fisher Scientific; 25 mM HEPES, pH 7.4; 150 mM NaCl; 1% NP-40; 1 mM EDTA; 5% glycerol) with protease and phosphatase inhibitors (Halt cocktail; Thermo Fisher Scientific) and spun in a centrifuge for 10 minutes at 14,000 rpm, and the supernatants were used to determine protein concentrations by BCA assays (Thermo Fisher Scientific). Each well of an SDS polyacrylamide gel was loaded with an equal amount of protein, and electrophoresis was conducted using Mini-PROTEAN Tetra cells (Bio-Rad Life Science, Hercules, CA, USA). Bands were transferred to polyvinylidene difluoride (PVDF) membranes (Bio-Rad Life Science) using the Trans-Blot Turbo system (Bio-Rad Life Science). Blocking buffer was 5% non-fat dry milk in PBS with 0.1% Tween 20. Primary antibodies were diluted in blocking buffer, and membranes were incubated on a shaker overnight at 4°C. After washing, secondary antibodies were applied at room temperature for one hour. After washing, a chemiluminescent HRP substrate (Thermo Fisher Scientific) was applied, and images were developed on ChemiDoc imaging system (Bio-Rad Life Science).
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7

Western Blot Analysis of Protein Expression

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The protein expression levels were analyzed by western blotting as described in our previous studies (Park et al., 2020 (link)). Cells were lysed in a buffer containing 50 mM Tris, 5 mM EDTA, 150 mM NaCl, 1 mM DTT, 0.01% NP 40, and 0.2 mM PMSF. The protein concentrations of the total cell lysates were measured by using bovine serum albumin as a standard. Samples containing equal amounts of protein were separated by sodium dodecyl sulfate-polyacrylamide gel electrophoresis (SDS-PAGE) and then transferred onto polyvinylidene difluoride (PVDF) membranes (Bio-Rad Laboratories). The membranes were blocked with 5% skim milk in Tris-buffered saline containing Tween-20 at RT. Then, the membranes were incubated with primary antibodies against MMP-2 (Cell signaling #4022), MMP-9 (Cell Signaling #13667), phospho-PI3K (Cell Signaling #4228), total PI3K (Cell Signaling #4292), phospho-Akt (Cell Signaling #4060), total Akt (Cell Signaling #4491) and β-actin (Abcam, MA, United States, ab189073) overnight at 4°C and then with polyclonal HRP-conjugated goat anti-mouse IgG (BD Pharmingen, 554002) or goat anti-rabbit IgG (BD Pharmingen, San Diego, CA, United States, 554021) secondary antibodies at room temperature for 60 min. The antigen-antibody complexes were detected using Western blot ECL reagents (GE Healthcare, Bucks, United Kingdom).
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8

Protein Extraction and Western Blot Analysis

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Whole protein was extracted from K562 cells using cell lysis Radioimmunoprecipitation assay buffer (RIPA buffer including 150 mM NaCl, 1.0% NP-40, 0.5% sodium deoxycholate, 0.1% SDS (sodium dodecyl sulphate), 50 mM Tris-HCl, pH 8.0, Protease inhibitors). For BCL11A, nuclear protein was extracted by Nuclear Extraction Kit (Abcam, UK). Approximately 30 to 50 μg of protein from samples was denatured and separated by 10% or 15% sodium dodecyl sulfate polyacrylamide gel electrophoresis (SDS-PAGE) and transferred to Polyvinylidene difluoride (PVDF) membranes (Bio-Rad, USA). After blocking by 5% BSA in TBST buffer (Tris-buffered saline, 0.1% Tween 20), immunoblotting was performed with rabbit antibodies against STAT3, AHSP, BCL11A (-XL, -L, -S), HBG globin chains, and β-actin (Abcam, UK). Horseradish peroxidase (HRP) conjugated secondary antibodies and Enhanced Chemiluminescence (ECL) kit (Amersham Biosciences, UK) were used for detection and visualization of protein levels.
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9

Hippocampal TLR4 and TLR2 Protein Expression

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The hippocampus tissue samples were homogenized with lysis buffer containing a cocktail of phosphatase and proteinase inhibitors and PMSF (Beyotime, Shanghai, China). Following denaturation, the lysates were separated on a 10% SDS-PAGE gel and transferred to polyvinylidene difluoride PVDF membranes (Bio-Rad, Hercules, CA, USA). The membranes were blocked with 5% nonfat powdered milk in TBST (Tris-buffered saline containing 0.1% Tween 20) for 1 h at room temperature (RT) and then incubated overnight at 4°C with a monoclonal rabbit anti-TLR4 (1 : 1000, Proteintech Group), anti-TLR2 (1 : 1000, Proteintech Group), or anti-GAPDH (1 : 5000, Proteintech Group) primary antibody. After washing in TBST, the membrane was incubated for 1 h at RT with a HRP-conjugated goat anti-rabbit antibody (1 : 10000; Jackson ImmunoResearch Laboratories, West Grove, PA, USA), and the protein bands were visualized using a Immun-StarTM HRP Chemiluminescence Kit (Bio-Rad). Images of the bands were recorded using the ImageQuant LAS 4000 system (GE Healthcare, Hino, Japan), and the band intensities were quantified using ImageQuant TL software (version 7.0, GE Healthcare). The amount of proteins was quantified (Quantity One, BioRad) and reported relatively to GAPDH. Three rats in each group were randomly selected for western blotting.
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10

Western Blot Analysis of Protein Expressions

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After the last day of the experiment (22nd day for MC3T3, 15th for 4B12), cells were homogenized in RIPA buffer with protease inhibitor cocktail. After centrifugation (20 min at 14,000×g, 4°C) supernatants were collected and stored at −80°C. Protein concentration was estimated with Pierce™ BCA Protein Assay Kit (Life Technologies, USA). Samples were subjected to SDS-polyacrylamide gel electrophoresis at 100 V for 90 min using Mini-PROTEAN Tetra Vertical Electrophoresis Cell (Bio-Rad, USA). Proteins were transferred onto polyvinylidene difluoride (PVDF) membranes (Bio-Rad, USA) using a Mini Trans-Blot ® Cell (Bio-Rad, USA) at 100 V for 1 h at 4°C. For blocking, 5% non-fat milk in TBST was applied. Samples were incubated overnight with primary antibodies. Next, membranes were incubated with secondary HRP-conjugated antibodies (dilution 1:5000 in TBST for 2 hrs). Antibodies and their dilutions are shown in Table 2. Signals were detected using Chemiluminescent/Fluorescent Substrate Kit (Vector Laboratories, Inc. SK-6604) with ChemiDoc MP Imaging System (Bio-Rad, USA) and quantified with Image Lab Software (Bio-Rad, USA).
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