The largest database of trusted experimental protocols

Alexa fluor 568 phalloidin

Manufactured by Thermo Fisher Scientific
Sourced in United States, United Kingdom, Germany, Switzerland, France, Australia

Alexa Fluor 568 phalloidin is a fluorescent dye used for the detection and visualization of F-actin in cells. It binds specifically to F-actin, allowing for the labeling and imaging of the actin cytoskeleton. The Alexa Fluor 568 dye exhibits bright red fluorescence when excited at the appropriate wavelength.

Automatically generated - may contain errors

436 protocols using alexa fluor 568 phalloidin

1

Visualizing Legionella Infection Dynamics

Check if the same lab product or an alternative is used in the 5 most similar protocols
F- and G-actin were visualized from Legionella-infected macrophages using Alexa Fluor® 568 phalloidin and Alexa Fluor® 488 DNAse I (Molecular Probes) and for studies examining colocalization of GFP-expressing bacteria (Legionella and E. coli) with the lysosome, Lysotracker™ red was used to stain acidic vesicles of infected BMDMs, as previously described14 (link). To examine cell death, after infection macrophages were stained with 4 uM ethidium homodimer-1 (EthD-1) from the LIVE/DEAD® viability/cytotoxicity kit (Molecular Probes), according to manufacturer’s instructions. Images were captured using laser scanning confocal fluorescence microscope with a 60X objective (Olympus Fluoview FV10i).
+ Open protocol
+ Expand
2

Immunofluorescence Staining of A549 and Calu-3 Cells

Check if the same lab product or an alternative is used in the 5 most similar protocols
A549 cells were seeded on chamber slides coated with collagen I (5x104/ well) and cultured for 1 day in absence of antibiotic, while Calu-3 cells were cultured at ALI for 10–14 days, as described previously.
A549 cells and ALI cultured Calu-3 cells were incubated with fluorescent bacteria as described in the previous paragraph. After washes, A549 cells were fixed with 3.7 % formaldehyde (Sigma) for 20 min and were then incubated with Alexa Fluor® 568 phalloidin (Molecular Probes, Life Technologies) diluted 1:400 in PBS + 0.1 % Tween20 + 1 % BSA for 30 min. Calu-3 cells were fixed directly on inserts by adding 3.7 % paraformaldehyde in the apical and basal chamber and were then permeabilized with 0.2 % Triton X-100 diluted in PBS for 5 min. Subsequently, samples were blocked with PBS containing 3 % Bovine Serum Albumin (BSA) (Sigma) for 15 min and incubated with rabbit ZO-1 polyclonal antibodies diluted in PBS + 1 % BSA (1:200) for 1 h. After washes, samples were incubated with Alexa Fluor® 568 goat anti-rabbit IgG (1:500) (Molecular Probes) for 30 min. After three washes with PBS, the insert was carefully detached by a scalpel and mounted on a microscope slide by adding one drop of ProLong® Gold Antifade Mountant with DAPI. Images were analyzed with Zeiss LSM710 confocal microscope.
+ Open protocol
+ Expand
3

Histological and Immunofluorescence Analysis of Small Intestine

Check if the same lab product or an alternative is used in the 5 most similar protocols
PP-containing small intestines were fixed in 10% formalin, routinely processed, and embedded in paraffin. Sections were stained with hematoxylin and eosin (H&E). For immunofluorescence staining, fixed, frozen small intestinal sections were rehydrated in PBS for 30 minutes and permeabilized in 0.2% Triton X-100/PBS for 10 minutes. The slides were blocked with 1% BSA/PBS for 1 hour at room temperature and incubated with Alexa Fluor 488 wheat germ agglutinin (WGA, Molecular Probes) and Alexa Fluor 568 Phalloidin (Molecular Probes) for 30 minutes. Sections were washed 3 times with PBS after each antibody incubation. After a 10-minute stain with DAPI, slides were mounted using Prolong Gold antifade (Molecular Probes). Sections were visualized using the BX51 microscope, DP72 camera, and DP2-BSW imaging software (Olympus America Inc.). WGA-positive luminal signals were quantified using Imaris software (Bitplane).
+ Open protocol
+ Expand
4

Immunofluorescent Assay for Cytoskeletal Analysis

Check if the same lab product or an alternative is used in the 5 most similar protocols
LoVo, D-WT and D-MT cells were grown in collagen coated (500 μg/mL) cover slip. Cells were treated DMSO or KY1022 (20 μM) with EGF (20 ng/mL) for 18 hours. Cover slips were fixed with 10% neutral formaldehyde for 2 hours, followed by permeabilization with 0.1% Triton X-100 for 30 minutes, blocking in 5% bovine serum albumin (BSA) for 1 hours. The cover slips were incubated with primary antibody overnight at 4°C, and followed by with anti-mouse Alexa Flour 488 (Life Technologies) or anti-rabbit Alex Flour 555 (Life Technologies) secondary antibody (1:500) for 1 hour at room temperature. Primary and secondary antibodies were diluted with PBS containing 1% BSA and 1% normal goat serum (NGS; Vector Laboratories). The cover slips were then counterstained with 4', 6'-diamidino-2-phenylindole (DAPI; Sigma-Aldrich) and mounted in Gel/Mount media (Biomeda Corporation). For cytoskeleton staining, cells were fixed with 10% neutral formaldehyde, permeabilized, blocked, and incubated with Alexa Fluor 568 phalloidin (MolecularProbes) for 30 minutes. Immunofluorescent images were captured using confocal microscopy (LSM 700, Carl Zeiss). At least 3 fields per section were analyzed.
+ Open protocol
+ Expand
5

Imaging Nanomaterial Effects on MC3T3-E1 Cells

Check if the same lab product or an alternative is used in the 5 most similar protocols
MC3T3-E1 cells were plated onto glass coverslips at a density of 5 × 105 cells/well in 24 well plates along with 3 mg of nanopowders. Cells were cultured for 7 days in differentiation media along with nanopowders. At the end of 7 days, cells were washed 1× with PBS to remove excess particles and fixed for 5 min with 4% paraformaldehyde. Cells were then washed 3× in PBS for 5 min each. Fixed cells were incubated for 1 h in 1% bovine serum albumin with 0.1% Triton-X. After blocking, cells were stained with Alexa Fluor 568 Phalloidin (1:400) (Molecular Probes) for 1 h at room temperature. After incubation, coverslips were rinsed in 1× PBS and washed for 3 × 5 min in 1× PBS. Cell nuclei were then counterstained using NucBlue fixed cell ReadyProbe reagent (Molecular Probes) for 20 min. Images were obtained using a Zeiss LSM 710 confocal microscope (UIC core imaging facility).
+ Open protocol
+ Expand
6

Visualizing Se-HAp Nanoparticle Uptake in Differentiated RAW264.7 Cells

Check if the same lab product or an alternative is used in the 5 most similar protocols
RAW264.7 cells seeded in coverslips laid at the bottoms of the 24-well plates were differentiated for 7 days in media containing 1 mg/well of Se-HAp nanoparticles. Cells on coverslips were then first washed with 1x phosphate buffered saline (PBS) to remove the nanoparticles that had not been endocytosed, then fixed for 5 minutes in 4 wt.% paraformaldehyde, then washed with 1x PBS and incubated in the dark for 30 minutes with Alexa Fluor 568 Phalloidin (1:400) (Molecular Probes) to stain f-actin filaments and OsteoImage™ (Lonza) to stain Se-HAp particles. After the incubation, the coverslips were rinsed in 1x PBS and washed in the dark for 3 × 5 minutes in 1x PBS. Cell nuclei were then stained using NucBlue fixed cell ReadyProbe reagent (Molecular Probes) for 20 minutes. Images were acquired on a Zeiss LSM 710 confocal microscope.
+ Open protocol
+ Expand
7

Immunofluorescence Staining Reagents

Check if the same lab product or an alternative is used in the 5 most similar protocols
Anti HA (cat. no. sc-7392) and anti Myc (cat. no. sc-40) mouse monoclonal antibodies were purchased from Santa Cruz. Anti Vinculin (hVIN1, cat. no. V9131) mouse monoclonal antibody was purchased from Sigma Aldrich. Alexa Fluor488 anti mouse and Alexa Fluor568 Phalloidin were obtained from Molecular Probes (Invitrogen). Mouse αHgl antibody (3F4) was a generous gift from Dr. William Petri (Department of Microbiology, University of Virginia). Fibronectin from human plasma (cat. no. F2006) was purchased from Sigma Aldrich and collagen type I from rat tail (cat. no. A10483-01) was obtained from Life Technologies. G418 (cat. no. 1720) was purchased from Sigma Aldrich. GalNAc (cat. no. A2795)was purchased Sigma Aldrich. All the chemicals used for the experiments were purchased from Sigma Aldrich.
+ Open protocol
+ Expand
8

Dissection and Imaging of Larval Fat Bodies

Check if the same lab product or an alternative is used in the 5 most similar protocols
Fat bodies were dissected from wandering third-instar larvae of the indicated genotypes in cold PBS. To compare the overall size of the fat bodies, dissected larval fat bodies (n = 5) were imaged using a stereomicroscope (Olympus).
For phalloidin staining, the fat bodies were fixed with 4% paraformaldehyde (Electron Microscopy Sciences, Hatfield, PA, USA), washed with PBS containing 0.2% Triton X-100, and then stained with Alexa-Fluor 568-phalloidin (1:300; Molecular Probes, Eugene, OR, USA). After additional washing, the stained fat bodies were transferred to mounting medium containing 4′,6-diamidino-2-phenylindole (DAPI; Abcam, Cambridge, UK) and photographed using a confocal laser microscope (Carl Zeiss, Oberkochen, Germany).
+ Open protocol
+ Expand
9

Histological and Immunofluorescence Analysis of Small Intestine

Check if the same lab product or an alternative is used in the 5 most similar protocols
PP-containing small intestines were fixed in 10% formalin, routinely processed, and embedded in paraffin. Sections were stained with hematoxylin and eosin (H&E). For immunofluorescence staining, fixed, frozen small intestinal sections were rehydrated in PBS for 30 minutes and permeabilized in 0.2% Triton X-100/PBS for 10 minutes. The slides were blocked with 1% BSA/PBS for 1 hour at room temperature and incubated with Alexa Fluor 488 wheat germ agglutinin (WGA, Molecular Probes) and Alexa Fluor 568 Phalloidin (Molecular Probes) for 30 minutes. Sections were washed 3 times with PBS after each antibody incubation. After a 10-minute stain with DAPI, slides were mounted using Prolong Gold antifade (Molecular Probes). Sections were visualized using the BX51 microscope, DP72 camera, and DP2-BSW imaging software (Olympus America Inc.). WGA-positive luminal signals were quantified using Imaris software (Bitplane).
+ Open protocol
+ Expand
10

Multi-Cell Aggregate Analysis by Flow Cytometry

Check if the same lab product or an alternative is used in the 5 most similar protocols
Fluorescence-activated cell sorting-purified CellTrace™ CFSE-labeled Treg, CellTrace™ Violet-labeled (CD11c+) DC and CellTrace™ Far Red DDAO-SE-labeled (Molecular Probes™) CD4+ Tconv were admixed in 96-well round-bottom plates. The plates were briefly centrifuged at 450 RCF, incubated for 8 h at 37°C, 5% CO2 then washed with PBS and fixed for 5 min in 2% paraformaldehyde. Proportions of various multi-cell aggregate combinations were calculated based on FCM analysis of scatter and fluorescence characteristics (Figure S1 in Supplementary Material). For analysis of multi-cell conjugates by imaging FCM, the re-suspended cell pellets were additionally stained with Alexa Fluor® 568 phalloidin (Molecular Probes™) following fixation/permeabilization then were analyzed using a FlowSight® Imaging Flow Cytometer and IDEAS® Software (Merck Millipore, Molsheim, France).
+ Open protocol
+ Expand

About PubCompare

Our mission is to provide scientists with the largest repository of trustworthy protocols and intelligent analytical tools, thereby offering them extensive information to design robust protocols aimed at minimizing the risk of failures.

We believe that the most crucial aspect is to grant scientists access to a wide range of reliable sources and new useful tools that surpass human capabilities.

However, we trust in allowing scientists to determine how to construct their own protocols based on this information, as they are the experts in their field.

Ready to get started?

Sign up for free.
Registration takes 20 seconds.
Available from any computer
No download required

Sign up now

Revolutionizing how scientists
search and build protocols!