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Ripa lysis and extraction buffer

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RIPA Lysis and Extraction Buffer is a reagent used for the extraction and solubilization of proteins from biological samples. It is a mild, non-denaturing detergent-based buffer that helps to disrupt cell membranes and release intracellular proteins while maintaining their native structure and function.

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657 protocols using ripa lysis and extraction buffer

1

Protein Extraction and Western Blot Analysis

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Total protein was extracted from cells using RIPA Lysis and Extraction Buffer (Thermo, USA), and then, the concentration of total protein was detected by RIPA Lysis and Extraction Buffer (Thermo, USA). After thermal denaturation, protein was loaded into NuPAGE Bis-Tris Gels 4%-12% (Thermo, USA) for electrophoresis. Membranes were blocked and then incubated with primary antibody as well as appropriate secondary antibody in turn. The bands were visualized on X-ray film (Fuji, Japan) by using Novex™ECL Chemiluminescent Substrate Reagent Kit (Invitrogen, USA). The antibodies applied in western blot were list in Table 2.
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2

Protein Extraction from Lung Adenocarcinoma Tissues

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Tumor and non-tumor control samples from 72 patients with LA were used for protein extraction (for six patients, samples were insufficient for protein extraction). To extract proteins from tissue samples, the frozen tissue was mixed and homogenized in ice-cold RIPA lysis and extraction buffer (Thermo Fisher Scientific, Inc.) containing protease inhibitors (Thermo Fisher Scientific, Inc.) and then centrifuged at 16,000 x g for 20 min at 4˚C.
To extract proteins from cells, the spent medium in the culture dishes was discarded, and the cells were washed with ice-cold PBS. The cells were then lysed by adding ice-cold RIPA lysis and extraction buffer (Thermo Fisher Scientific, Inc.) containing protease inhibitors (Thermo Fisher Scientific, Inc.). The cells were collected using a cold plastic cell scraper and then subjected to centrifugation at 16,000 x g for 20 min at 4˚C. The total protein concentration was determined using a Pierce™ BCA Protein Assay Kit (Thermo Fisher Scientific, Inc.) and the protein was stored at -80˚C until use.
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3

Western Blot Protein Quantification Protocol

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The cells were lysed with RIPA Lysis and Extraction Buffer (Invitrogen™, USA) supplemented with PhosSTOP™ phosphatase inhibitor and cOmplete™ protease inhibitor cocktail (Roche Diagnosis; DE). The protein concentration was determined using a Coomassie Plus (Bradford) Assay Kit (Pierce™, USA) according to the manufacturer’s instructions. Protein lysates were separated by NuPAGE™ 4–12%, Bis–Tris gel and then transferred to PVDF membranes (Invitrogen™, USA). Membranes were blocked in Pierce™ Clear Milk Blocking Buffer (Pierce Biotechnology; USA) and incubated with primary antibodies (Supplementary X) at 4 °C overnight. Then the membranes were washed with PBS-T and incubated with secondary antibodies for 1 h at RT (Antibodies are specified in Supplementary Table 1). Amersham™ ECL Select™ western blotting detection reagent (GE Healthcare; UK) was used for visualizing and detection following manufacturer’s instruction.
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4

Cell Lysate Preparation and Western Blotting

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To prepanre cell lysates, RIPA Lysis and Extraction Buffer (Invitrogen; ThermoFisher Scientific, Inc., MA, USA) which contained 10% protease inhibitor (Thermo Scientific, USA) were used to extract cell lysates by incubated on ice for 30 min, and then centrifuged at 14000 x g for 15 min at 4 °C. The protein concentrations were determined by BCA kit (Thermo Scientific, USA). For western blotting, we used the protocol which was performed previously [31 (link)]. In brief, we first mixed supernatants with 4x SDS-PAGE sample loading buffer, and they were denatured at 95 °C for 10 min. Second, the proteins were separated by SDS-PAGE gel, transferred to a polyvinylidene difluoride membranes, incubated with specific primary antibodies at 4 °C overnights, and detected with horseradish peroxidase (HRP)-conjugated secondary antibodies by using a VersaDoc Image System (BioRad, Hercules, CA, USA). For immunoprecipitation, the lysate was treated using the Dynabeads™ Protein G Immunoprecipitation Kit (Invitrogen; ThermoFisher Scientific, Inc., MA, USA) according to the protocol. The final precipitated proteins were analyzed via western blotting with the corresponding antibodies.
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5

Western Blot Analysis of Mammary Proteins

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Mammary gland tissues were solubilized in RIPA Lysis and Extraction Buffer (Invitrogen; Thermo Fisher Scientific, Inc., Waltham, MA, USA) to extract total protein. After boiling for 5–10 min, the protein samples extracted from different cell suspensions were separated by SDS-PAGE and then transferred onto a nitrocellulose membrane. The membrane was blocked with 5% nonfat dry milk prepared in Tris-buffer and incubated with the primary antibodies (Santa Cruz Biotechnology, Inc., Santa Cruz, CA, USA) for 1 h at room temperature. The membrane was then incubated with a horseradish peroxidase-conjugated anti-rabbit IgG secondary antibody (Santa Cruz Biotechnology, Inc., Santa Cruz, CA, USA), for 4 h at room temperature. The blot was developed using the ECL™ Western Blotting Detection Reagent (GE Healthcare, Piscataway, NJ, USA), and the proteins were visualized by enhanced chemiluminescence (Amersham Biosciences, Piscataway, NJ, USA).
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6

siRNA Knockdown of MCT4 Pathway

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The cells were divided into siRNA interference group (si-MCT4 group), negative control group (si-NC group) and blank control group (NC group). The cells were harvested and lysed in RIPA Lysis and Extraction Buffer (Invitrogen, USA). The protein concentration of the lysate was determined by Pierce BCA protein assay kit (Thermo, Waltham, MA, USA). The lysate was electrophoretic on 8% SDS polyacrylamide gel and transferred to PVDF membrane (Millipore, Boston, MA, USA). The membrane was probed with the primary antibodies overnight at 4°C. The primary antibodies included MCT4 (dilution 1:1000; ProteinTech Group, Chicago, IL, USA), PFKFB3 (dilution 1:1000; Abcam, UK), ENO2 (dilution 1:1000; Servicebio, Wuhan, China) and β-actin (dilution 1:1000; CST, Boston, MA, USA). Then the membrane was incubated with the horseradish peroxidase-conjugated secondary antibodies (Zhongshan Jinqiao, Beijing, China) and scanned by Odyssey imaging system. The relative quantitative analysis was completed by lmageJ software, and the experiment was repeated three times.
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7

Western Blot Analysis of Protein Expression

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Cultured cells were collected and lysed in ice-cooled RIPA Lysis and Extraction Buffer (Invitrogen; Thermo Fisher Scientific, Inc.). Bicinchoninic acid assay (Nanjing KeyGen Biotech Co., Ltd; Nanjing, China) was employed to determine the total protein concentration. Sodium dodecyl sulfate–polyacrylamide gel electrophoresis (10% gel) was performed for the separation of proteins with equivalent concentrations, following which they were transferred to polyvinylidene fluoride membranes. Blocking was performed by incubating the imprinted membranes for 2 h at room temperature with 5% nonfat dried milk diluted in Tris-buffered saline containing 0.1% of Tween 20. After overnight incubation with primary antibodies at 4°C, a horseradish peroxidase-conjugated secondary antibody (cat. no. ab6721; Abcam, Cambridge, UK) was diluted at a concentration of 1:5000 and further used for incubating the membranes at room temperature for 1 h. The protein bands were developed using ECL Western Blotting Substrate kit (Abcam). The primary antibodies and their sources are as follows: ITGB1 (cat. no. ab52971; Abcam) and GAPDH (cat. no. ab181602; Abcam). GAPDH was used as the loading control.
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8

Western Blot Analysis of FOXO3 Protein

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Total protein was extracted from cultured cells using RIPA Lysis and Extraction Buffer (Invitrogen, Carlsbad, CA, USA). The concentration of total protein was detected using the BCA Protein Assay Kit (Beyotime; Shanghai, China). Equal amounts of protein were separated using 10% sodium dodecyl sulfate–polyacrylamide gel electrophoresis and transferred onto polyvinylidene fluoride membranes. After blocking with 5% skimmed milk for 2 h, the membranes were incubated overnight with specific primary antibodies targeting FOXO3 (cat. No. ab109629; Abcam, Cambridge, UK) or GAPDH (cat. No. ab181603; Abcam) and then probed with a horseradish peroxidase-conjugated goat anti-rabbit immunoglobulin G secondary antibody (cat. No. ab205718; Abcam). Finally, the Enhanced Chemiluminescence Detection System (Pierce; Thermo Fisher Scientific, Inc.) was used to develop protein signals.
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9

Protein Extraction and Western Blotting

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Total proteins from exosomes or cells were isolated using the RIPA Lysis and Extraction Buffer (Invitrogen) according to the manufacturer's protocol. The proteins were subjected to 10% sodium dodecyl sulfate-polyacrylamide gel electrophoresis (SDS-PAGE), after which they were transferred onto polyvinylidene difluoride (PVDF) membranes (Millipore, Massachusetts, USA), and then blocked with 5% skim milk. The PVDF membranes were incubated with VCAM-1 (Cell Signaling Technology, CST, Boston, USA, #32653); ICAM-1 (CST, #4915); CD63 (Abcam, Shanghai, China, ab134045); KLF2 (Abcam, ab203591); or GAPDH (CST, #5174) antibodies overnight at 4°C, and then incubated with secondary antibodies (goat anti-rabbit or mouse) (ZSGB-BIO, Beijing, China) for 1 h. The PVDF membranes were then exposed in a chemiluminescence instrument (Bio-Rad ChemiDoc XRS+, USA) using the SuperSignal West Dura Extended Duration Substrate Kit (Thermo, Scientific, Beijing, China).
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10

Protein Expression Analysis in Cells

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Interested cells were lysed in cold RIPA Lysis and Extraction Buffer (Invitrogen, Gaithersburg, MD, USA) containing a protease inhibitor (Selleck, Houston, TX, USA). After centrifugation, equal amounts of the protein were loaded for electrophoresis on 10% denaturing SDS-PAGE gels. The blots were probed with the primary antibodies overnight at 4 °C, followed by incubation with the appropriate horseradish peroxidase (HRP)-conjugated secondary antibodies at room temperature for 2 h. CD68 (1:1000, CST, Beverly, MA, USA), CD206 (1:1000, CST, Beverly, MA, USA), E-Ca (1:1000, CST, Beverly, MA, USA), N-Ca (1:1000, CST, Beverly, MA, USA) (1:1000, CST, Beverly, MA, USA), snail (1:1000, CST, Beverly, MA, USA), slug (1:1000, CST, Beverly, MA, USA), p27kip (1:1000, CST, Beverly, MA, USA), pAKT (1:1000, CST, Beverly, MA, USA), pSTAT3 (Tyr705, 1:1000, CST, Beverly, MA, USA) or GAPDH (1:1000, CST, Beverly, MA, USA) were used in this study.
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