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49 protocols using reverse transcription kit

1

Quantitative Real-Time PCR Analysis of Gene Expression

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The SPARKeasy Cell RNA Kit (Sparkjade, Qingdao, China) was utilized for the extraction of total RNA from the transfected cells. The same amount of total RNAs was reversed to cDNA according to the Reverse Transcription Kit manufacturer’s protocol (AG11705, Accurate Biology). Afterwards, RT-qPCR was conducted utilizing the QIAGEN Rotor-GeneQ (QIAGEN, Dusseldorf, Germany) with SYBR Green Pro. Tag. HS PremixⅡ (AG11702, Accurate Biology, Changsha, China). The thermocycling conditions were as follows: pre-denaturation at 95 °C for 30 s, followed by 40 cycles of denaturation at 95 °C for 5 s, and extension at 60 °C for 30 s. All experiments were repeated three times independently, and each sample underwent a melting curve analysis to verify the specificity of amplification. Table 1 presents the primer sequences. The expression of the target genes was normalized to GAPDH, and fold changes were calculated in the manner of the 2−ΔΔCT.
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2

Quantitative Analysis of Antithrombin and USP2

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Cells were harvested after treatments and RNA was isolated using TRIzol (Takara). cDNA for quantitative polymerase chain reaction (qPCR) assays was reversed transcribed from mRNA using a reverse transcription kit (AG11711) according to supplier’s protocols (Accurate Biotechnology Co.). All qPCR assays were conducted on a StepOnePlus device (Applied Biosystem) using a SYBR qPCR kit (AG11701, Accurate Biotechnology Co.) and the following primer pairs: antithrombin, 5′-GCTAAACCCCAACAGGGTGA-3′ (forward) and 5′-ACAAGGGTTGGCTACTCTGC-3′ (reverse); USP2,5′-GGGCTCCATAACGAGGTGAAC-3′ (forward) and 5′-CTCCACATCTGTCGGCCTTTC-3′ (reverse); and 18S RNA, 5′-AAACGGCTACCACATCCAAG-3′ (forward) and 5′-CCTCCAATGGATCCTCGTTA-3′ (reverse).
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3

RT-PCR Analysis of C. albicans Gene Expression

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Reverse transcription-polymerase chain reaction (RT-PCR) was conducted as described previously (Zhong et al., 2017 (link)) with slight modifications. Briefly, C. albicans cells with an initial concentration of 3.0 × 106 CFU/mL were cultured in YPD medium at 35°C for 6 h. C. albicans cells were collected and washed, and total RNA was isolated by an EASYspin yeast RNA rapid extraction kit (RN10, Aidlab Biotechnologies, China). cDNA was obtained by a reverse transcription reaction performed with a reverse transcription kit (AG11728, Accurate Biotechnology, China). RT-PCR was performed with a 7500 real-time PCR system (Thermo Fisher, United States), and specific primers were synthesized by Sangon Biotech (Table 2). SYBR green (AG11718, Accurate Biotechnology, China) was used to monitor the amplified products. The expression of each gene was normalized to that of 18S rRNA. The relative genes expression were quantified by the 2−△△Ct method and triplicate independent experiments were performed to obtain a mean value.
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4

Quantifying mRNA Expression in Cultured Cells

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For analysis of mRNA expression, RNA of cultured cells from six‐well‐plate was extracted using 1ml TRIzol reagent. 1000 ng of RNA was reverse‐transcribed into first‐strand cDNA using the Reverse Transcription Kit (Accurate Biology). Primers were designed in UCSC database or acquired from ORIGEN database. All primers have been blasted and tested their efficiency. SYBR Green PCR Master Mix (Takara) was used to perform qPCR. mRNA expression was normalized to the reference gene Gapdh.
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5

Quantitative Real-Time PCR Analysis of Carcinoid Tissue

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Quantitative real-time PCR Total RNA of carcinoid tissues was extracted with Trizol reagent (A2A0209, Accurate Biotechnology, China). cDNA was amplified with reverse transcription kit (A2A1386) was provided by Accurate Biotechnology Co. (China). The sequences of primers are in Supplementary Table 1. Gene expression levels were assayed by qRT-PCR using the Roche LightCycler® 480 system (Roche, Basel, Switzerland) with the SYBR Green system (A2A1436, Accurate Biotechnology).
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6

Transcriptome Validation via qRT-PCR

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The reliability of transcriptome sequencing was confirmed with qRT–PCR. RNA was extracted from leaves using a TRIzol kit (Accurate Biology, Changsha, China); cDNA was prepared using a reverse transcription kit (Accurate Biology, Changsha, China); and real-time PCR was performed using the SYBR Green method (Accurate Biology, Changsha, China). SiActin (SETIT_026509mg) was used as an internal standard, and relative expression levels were calculated using the 2−ΔΔCt method. At least three replicates were performed in each independent experiment. Primer Premier 5 software (Primer Premier 5.0) was used to design the PCR primers.
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7

Investigating Gene Expression in Liver Tissue

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Liver tissues were homogenized in TRIzol reagent (Invitrogen Corp, Carlsbad, CA, United States) and the total RNA was isolated. RNA concentration was measured using a NanoDrop 2000°C spectrophotometer, and was reversely transcribed into complementary DNA by reverse transcription kit (Accurate Biology, Shanghai, China). The PCR primers (Shanjin Biotech, Shanghai, China) showed in Table 1. GAPDH was used as the internal control, and the expression of the target gene was normalized to GAPDH expression, and the relative expression was calculated by the 2−ΔΔT method.
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8

Gene Expression in Poplar Tissues

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The RNA of 84 K poplar (P. alba × P. glandulosa) leaves, stems, roots, buds, phloem, and xylem was extracted using a plant RNA extraction kit (Accurate Biology, Hunan, China) and converted into cDNA using a reverse transcription kit (Accurate Biology, Hunan, China). Primers were designed by Premier 5.0 and synthesized by TSINGKE Biology Co., Ltd. (Chengdu, China). PtrUBQ and PtrActin were used as internal reference genes, and cDNA was used as a template for RT-qPCR amplification (He et al., 2018 (link), 2019 (link)). Five biological replicates and four technical replicates were performed for each sample. PCR was performed on a Bio-Rad CFX96 instrument (Bio-Rad, Hercules, United States) and the 2–ΔΔCt algorithm was used to analyze the results (Livak and Schmittgen, 2001 (link)).
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9

Quantifying miR-21-5p Expression

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TRIzol Reagent (GLPBIO, Montclair, CA, USA) was used to extract RNA. The extracted total RNA concentration was determined, and then the RNA was reverse-transcribed into cDNA using a reverse transcription kit (Accurate Biology, Hunan, China). The miRNA qRT-PCR Starter Kit (RiboBio, Guangzhou, China) was used to analysis miR-21-5p level, and U6 was used for the internal control for normalization purposes, and U6 was used as a control. Their sequences were as follows: miR-21-5p: AUCACAUUGCCAGGGAUUUCC; U6: forward: CGCTTCGGCAGCACATATAC; and U6: reverse: TTCACGAATTTGCGTGTCATC. The results were evaluated by using the 2-ΔΔCt method.
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10

RNA Extraction and RT-PCR Analysis

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Total RNA was isolated from chondrocytes by the TRIZOL method (Thermo Fisher Scientific Inc., USA) according to its instruction. And 1 ​μg RNA was reverse transcribed using the reverse transcription kit (Accurate Biotechnology). Gene expressions were determined using RT-PCR with the relevant kits base on the manufacturer's instructions. Gene expression was expressed as the fold change, and was normalized to that of GAPDH, using the delta–delta Ct method. The mRNA primers for the listed genes were described in the other study [9 ].
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