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46 protocols using intensilight c hgfi

1

Immunofluorescence Analysis of NF-κB in PCa Cells

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After treatment with different concentrations of TFLS, PCa cells (PC3, DU145) were washed twice with PBS and seeded on coverslips in a 12-well plate overnight. After washing with PBS, the cells were fixed in 4% paraformaldehyde for 30 min. Following fixation, the coverslips with PCa cells were washed with PBS three times and then permeabilized with 0.5% Triton X-100 for 15 min at room temperature. Cells were then washed with PBS three more times before incubating with primary antibodies against NF-κB p65 at 4°C overnight. The next day, the slides were stained with corresponding Alexa Fluor® 555-conjugated secondary antibodies for 2 h at room temperature. The cell nuclei were then stained with DAPI for 10 min and examined by fluorescence microscopy (Nikon Intensilight C-HGFI, Nikon Corporation, Japan).
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2

Wide-field Time-lapse Microscopy Protocol

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Time-lapse wide-field microscopy was performed as previously described (Hung et al., 2011 (link); Albeck et al., 2013 (link)). Briefly, 1000–2500 cells were seeded 2–4 days prior in glass-bottom 24-well (MatTek) or 96-well plates (MGB096-1-2-LG-L; Brooks Life Sciences, Chelmsford, MA), with well bottom pretreated with type I collagen (BD Biosciences, San Jose, CA) to promote cell adherence. For experiments with drug addition, cells were placed in imaging medium until the addition of drug diluted as a 5x-20x concentrated spike. Cells were maintained in 95% air and 5% CO2 at 37°C in an environmental chamber. Images were collected with a Nikon (Tokyo, Japan) 20×/0.75 NA Plan Apo objective on a Nikon Eclipse Ti inverted microscope, equipped with a Lumencor SOLA or a Nikon Intensilight C-HGFI light source. Fluorescence filters were from Chroma (Bellows Falls, VT): T-Sapphire (89000 ET Sedat Quad; or ET405/20x, T425LPXR, and ET525/50 m), YFP (89002 ET ECFP/EYFP; or 41028), and RFP (49008 ET mCherry; or 41043 HcRed). With a Hamamatsu Photonics (Hamamatsu, Japan) ORCA-ER or ORCA-AG cooled CCD camera or an Andor Zyla 5.5 scMOS camera, images were acquired every 3–8 min with 2 × 2 binning and an exposure time of 200–225 ms for T-Sapphire, 70–225 ms for YFP, 70–225 ms for RFP.
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3

Fluorescent Imaging of Cell-Nanoparticle Interactions

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A total of 5.0 × 104 of 3T3 cells per well in a 96-well plate were co-cultured with the 1.0 μg/mL of SA samples for 72 h. The viability of the 3T3 cells was assayed by using 10% CCK-8 reagent for 60 min to determine the toxicity of the SA samples. Afterwards, the cells were fixed with glutaraldehyde, followed by staining with 0.1 μg/mL of 4′,6-diamidino-2-phenylindole (DAPI) for the imaging of the nuclei. An inverted fluorescent optical microscope (Nikon, Eclipse Ti-S, Japan) was utilized. The fluorescent light source was Nikon Intensilight C-HGFI, and two fluorescent filter cubes (Ex = 340–380 nm, Em = 435–485 nm, corresponding to DAPI, and Ex = 465–495 nm, Em = 512–558 nm, corresponding to SA samples) were used to observe the distribution of SA samples in the cytoplasm. A scientific-grade CCD (Dhyana, model: 400 BSI, Tucsen, Fuzhou, China) was used to record the images. The magnification of the OM was 200×. The original fluorescent images were recorded in greyscale. ImageJ software (an open-source software, NIH Image, version 1.54f, Bethesda, MD, USA) was employed to merge and convert two fluorescent images into visible colors, e.g., blue for cell nuclei and green for SA1–SA7 samples.
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4

Fluorescence Microscopy of Spn Cells

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Spn cells were prepared for microscopy as described below in sections describing labeling. Cells were viewed on a Nikon Eclipse E-400 epifluorescence phase-contrast microscope using a Nikon Intensilight C-HGFI epifluorescence illuminator. Images were captured using a CoolSNAP HQ2 charge-coupled device (CCD) camera (Photometrics) and processed with Nikon NIS-Elements BR imaging software. sfGFP and isfGFP images were collected using the FITC-HYQ filter (Ex 460–500 nm; Em 560 nm) with a 1 s exposure time. Halo-Tag (HT) images were collected using the Texas Red-HYQ filter (Ex 532–587 nm; Em 650 nm) with a 1 s exposure time. Additional image processing was completed using FIJI (Schindelin et al., 2012 (link)).
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5

Immunofluorescence Analysis of Mucosal Barrier

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After CLP surgery 48 h later, mice were sacrificed and the colonic and ileac segments 2 to 3 cm in length were excised, washed in phosphate buffered saline (PBS), fixed in 4% formaldehyde, embedded in paraffin, and sectioned (5-μm thick). A portion of the paraffin sections were stained with hematoxylin and eosin (H&E) and the rest was used for immunofluorescence using procedures detailed previously (32 (link)). Briefly, antigens were unmasked by boiling under pressure in sodium citrate buffer. Tissue sections were cooled to room temperature (about 20°C) naturally and then washed with PBS three times (5 min each wash). The sections were incubated with a blocking buffer (5% donkey serum in PBS) for 60 min against the species of the secondary antibody. Primary antibodies (Mucin 2 H-300, rabbit polycional lgG, Santa Cruz, USA) were incubated at overnight 4°C and then the sections were washed three times with PBS. Alexa Fluor® 488 and 594, donkey anti-rabbit lgG (H+L; Life, USA) were diluted 1:1000 and incubated for 1 h at RT and washed three times in PBS. Nuclei were counterstained using DAPI. The tissue sections were then photographed with Nikon Eclipse Ti-U microscope and Nikon Intensilight C-HGFI (Japan).
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6

Fluorescent Protein Imaging of Chloroplasts and Nuclei

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Mid-log phase chloroplast sfGFP transformants and wild type were imaged with a Nikon Eclipse 80i microscope, equipped with a Nikon Intensilight C-HGFI mercury lamp light source, a Nikon Plan Apo VC 100× objective lens, and a Nikon DS-QiMc camera. NIS-Elements BR 4.30.01 software was utilized for imaging chlorophyll and sfGFP (31017 – Chlorophyll Bandpass Emission and 41017 – Endow GFP/EGFP Bandpass, both from CHORMA®). Imaging of wild type and transgenic lines employed equivalent exposure time and gain settings. ImageJ was used for post imaging analysis.
Nuclear mCherry transformants and wild type were imaged with a Nikon C1si confocal microscope, equipped with EZ-C1 3.60 software. Chlorophyll was imaged with a 650 LP filter. mCherry was imaged with a 590/50 filter. Both chlorophyll and mCherry were excited with a 561.4 nm laser. Laser intensity, pin hole size, pixel dwell time, and gain were set using an mCherry clone. Equivalent settings were utilized for imaging wild type cells. ImageJ was used for post imaging analysis.
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7

Histological Analysis of Muscle Fiber CSA

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GA muscles were immersed in an optimal cutting temperature (OCT) solution immediately after dissection and frozen at −80 °C. OCT blocks were cut to a thickness of 10 μm and stained with hematoxylin (30002; Muto Pure Chemicals Co., Ltd., Tokyo, Japan) and eosin (H&E, HT110132; Sigma-Aldrich). Subsequently, these stained sections were examined (200× magnification) for cross-sectional area (CSA) analysis under a confocal microscope (Nikon Intensilight C-HGFI, Tokyo, Japan) and NIS-element AR 4.00.00 software. The CSA of myofibers was then measured using the ImageJ software.
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8

Quantitative and Qualitative Phagocytosis Assay

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For quantitative analysis, the transfected PEMs were stimulated with PepO for 24 h and infected with S. aureus at a MOI of 1:50 or D39 at a MOI of 1:100 at 37°C for 30 min, a time point when there is no bacterial death. After washing with PBS for 3 times, 100 μl pre-cold double distilled water (ddH2O) was added. The samples were collected and placed at 4°C for 15 min to fully burst the PEMs. Following a series of dilution, the bacteria were seeded on the Columbia sheep blood agar and cultured in 5% CO2 at 37°C overnight. The bacterial colonies were counted. For qualitative analysis, the transfected PEMs were stimulated with PepO for 24 h and infected with FITC-labeled S. aureus at a MOI of 1:50 or FITC-labeled D39 at a MOI of 1:100 at 37°C for 30 min. After washing with PBS for 3 times, PEMs were fixed with 0.4 ml 4% paraformaldehyde for 15 min followed by 3 washing procedures and stained with DAPI for 10 min followed by another 3 washing procedures. The phagocytic bacteria were observed under a Nikon Eclipse 80i microscope equipped with a Nikon Intensilight C-HGFI.
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9

Vaccinia Virus Neutralization Assay

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Two-fold serial dilutions from 1/40 to 1/5120 of serum samples were incubated with 2 × 103 PFU of VVTG17990 in Corning tubes for one hour at 37 °C and incubated with CEF for 3 days at 37 °C with 5% CO2. Plates were examined using fluorescence microscopy (Stereoscopic microscope Nikon SMZ18 and epi-fluorescence light source Nikon Intensilight C-HGFI) to score GFP positive plaques. The percent neutralization was calculated relative to the number of GFP plaques in the absence of serum. The neutralizing antibody titer was defined as the highest serum dilution resulting in a 50% reduction in the number of plaques. Samples were measured in triplicate and mean neutralization titers for dogs were plotted ± standard deviation.
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10

In Vivo ROS Detection in Zebrafish

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A 8 mM stock of 2′,7′–dichlorofluorescein diacetate (DCFH-DA, Sigma) was prepared in DMSO, aliquoted and stored at −80 °C. For in vivo ROS detection, control and grade 2 and 3 larvae were incubated in 20 μM DCFH-DA (0.5% DMSO in the incubation medium) for 1 hour in the dark at 28.5 °C. After the larvae were washed 5 times for 5 min with fish water, fluorescence was observed under 488 nm excitation using a Nikon Eclipse 90i microscope fitted with a Nikon Intensilight C-HGFI unit.
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