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26 protocols using methyl thiazolyl tetrazolium (mtt)

1

Lysenin Cytotoxicity Assay in Cells

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Cells seeded in 24 well plates were cultured overnight at 37°C, washed once with serum-free DMEM and treated with various concentration of lysenin (0, 20, 40, 80, 160, 320 ng/ml) diluted in serum free DMEM for 2 h at 37°C. The media was discarded, and MTT solution [1:1 ratio mixture of serum-free DMEM and 5mg/ml MTT (Nacalai Tesque) resolved in PBS] was added and incubated for 30 min at room temperature with protection from light. The MTT solution was discarded, and lysis solution (4 mM HCl, 0.1% NP40 in isopropanol) was added and incubated for 30 min at room temperature with protection from light. The cell lysate was transferred to a 96 well plate, and absorbance at λ595 was measured using iMark Microplate Reader (BIORAD).
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2

Fibroblast Viability Assay with P. angulata

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Fibroblast viability was measured in cell culture after 24 h incubation with 3, 5, and 10 µg/mL P. angulata and media culture in the control group. MTT assay was performed by added 15 µL solution of MTT from Nacalai Tesque (23547) in 0.5 mg/mL PBS incubated in CO2 5% incubator for 2 h. Next, 100 µL dimethyl sulfoxide (the) was added as a stopper solution. The colour absorbance of purple formazan was measured using a 570 nm spectrophotometer.
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3

SARS-CoV-2 Neutralization Assay Protocol

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Antiviral compounds and antibodies were serially diluted 2-fold increments by culture medium containing 2% FBS and plated on 96-well microplates. The diluted compounds in the plates were mixed with SARS-CoV-2 and cell suspensions. The diluted antibodies were initially incubated with SARS-CoV-2 for 30 minutes and then added to the cell suspension. Cells in the plates were cultured for 2 to 3 days, and then exposed to MTT (3-[4,5-dimethyl-2-thiazolyl]-2,5-diphenyl-2H-tetrazolium bromide) (Nacalai Tesque). Cell viability was determined by measurement of absorbance at 560 nm and 690 nm. EC50 values were defined in GraphPad Prism version 8.4.3 (GraphPad Software) with a variable slope (four parameters). Non-treated cells were used as a control for 100% inhibition.
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4

Cell Viability Assay for SARS-CoV-2 Inhibitors

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The MTT (3-[4,5-dimethyl-2-thiazolyl]-2,5-diphenyl-2H-tetrazolium bromide) (Nacalai Tesque) assay was performed to evaluate cell viability following viral infection according to methods previously described [46 (link)]. Camostat, E-64d, nafamostat (FUJIFILM Wako Pure chemical) and remdesivir (MedChemExpress) were serially diluted 2-fold increments in duplicates and plated on 96-well microplates in MEM containing 2% FBS. Vero-TMPRSS2 were infected with either WT or S mutants of SARS-CoV-2 at 4–10 TCID50 and added to the plates. Plates were incubated at for 3 days, and CPE was determined for calculation of 50% endpoints using MTT assay. The concentration achieving 50% inhibition of cell viability (effective concentration; EC50) was calculated.
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5

Comparative Evaluation of Gallic Acid Nanoformulations

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Gallic acid of 97% purity, iron oxide coated with polyethylene glycol (PEG) nanocarrier (Fe3O4-PEG) and gallic acid-iron oxide coated with PEG nanocomposite (Fe3O4-PEG-GA) were provided by the Material Synthesis and Characterization Laboratory, Institute of Advance Technology University Putra Malaysia (Serdang Selangor Malaysia). All three drugs were used for the preliminary screening of the effectiveness between gallic acid nanocomposite and pure gallic acid against normal cell and three different types of cancer cell lines. To prepare the stock solution, 5 mg of each drug was initially dissolved in 200 µL of dimethyl sulfoxide (DMSO) before the mixture was vortexed and sonicated for at least 30 min to ensure that the drug was completely dissolved. Upon sonication, 800 µL of RPMI 1640 (Nacalai Tesque, Kyoto, Japan) was added and then vortexed for 2 min to make the total volume of 1 mL. The drug sub stock was further diluted to a series of concentrations (0.47–200 µg/mL) and was used on the same day it was prepared. MTT [3-(4,5-dimethylthiazol-2-yl)-2,5-diphenyltetrazolium bromide] and Trypsin-EDTA (Ethylene diamine tetraacetate) (0.25%) were purchased from Nacalai Tesque (Kyoto, Japan).
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6

Evaluating Cell Growth and Drug Sensitivity

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Cells were grown in 96‐well plates (As One) at 1000 cells/well for 12 h. In 3D culture conditions, cells were grown in round‐bottomed ultra‐low attachment 96‐well plates at 1000 cells/well for 4 days. To evaluate the growth of different clones, cells were cultured for 0–4 days. To examine their sensitivity to Raf kinase inhibitor V (Merck), MEK inhibitor I (Merck), tunicamycin (Cayman Chemical), and toyocamycin (Cayman Chemical), cells were treated with these drugs at different concentrations for 48 h in 2D culture and for 10 days in 3D culture. Then cells were incubated with 0.5 mg/mL MTT (Nacalai Tesque) for 4 h, followed by incubation with 5% SDS in 5 mM HCl for 12 h. Absorbances at 550 and 690 nm were measured using SpectraMax® M2e (Molecular Devices).
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7

Flavonoids Modulate X-ray-Induced DNA Damage in NHEKs

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NHEKs (Kurabo, Osaka, Japan) were seeded on coverslips in 12-well plates for 12 hours and preincubated with 30, 60, or 100 μM flavonoids for 1 hour before exposure to 5 Gy X-rays using a Hitachi MBR-1520 (Hitachi Medical, Tokyo, Japan). Cells were washed with PBS, fixed with freshly prepared 4% paraformaldehyde, and permeabilized with Triton X-100. The anti-γH2AX antibody (Cell Signaling Technology, Beverly, MA) was diluted to 1:500 in PBS containing 1% BSA, added to the cells, and incubated for 12 hours at 4 °C, followed by incubation with a secondary antibody (1:500; anti-mouse, Abcam, Cambridge, United Kingdom) for 2 hours at 25 ± 1 °C. The cells were counterstained with DAPI to visualize the cell nuclei. The number of γH2AX foci was counted under a fluorescence microscope. The irradiation dose was chosen because it has been previously shown to cause DNA damage in human KCs (Zhu et al., 2014 (link)). Cell viability was measured 72 hours after 20 Gy X-ray irradiation using the MTT (3-[4, 5-dimethylthiazol-2-yl]-2, 5-diphenyltetrazolium bromide) assay (Nacalai Tesque, Kyoto, Japan).
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8

Antioxidant and Cytotoxicity Assays

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Methanol, n-hexane, n-butanol, ethyl acetate, chloroform, Triton X-100 and Tween 20 were purchased from Fisher Scientific (Loughborough, Leicestershire, UK). Linoleic acid, gallic acid, quercetin, β-carotene (Type I synthetic, 95%), bovine serum albumin (BSA), ABTS, potassium persulfate, ferrous sulfate, hydrogen peroxide, AAPH, tetramethylchroman-2-carboxylic acid (trolox), ethylenediamine tetra acetic acid (EDTA), DPPH, dichloro-dihydro-fluorescein diacetate (DCFH-DA), Folin–Ciocalteu’s phenol reagent and ferrozine were supplied by Sigma-Aldrich Co. (St. Louis, MO, USA). Dulbecco’s Modified Eagle’s Medium (DMEM), gentamicin and fetal bovine serum (FBS) were purchased from GIBCO (Grand Island, NY, USA). The 8-iso prostaglandin F2α ELISA kit was bought from Cusabio (Wuhan, China). MTT and neutral red were obtained from Nacalai Tesque (Kyoto, Japan). All of the other chemicals were purchased from Sigma-Aldrich Co.
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9

Evaluating Cell Viability in HMVECs

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HMVECs were seeded on 96-well plates. TNF-α stimulation and influenza A (H3N2) infection were performed at the indicated concentrations. Cell viability was then measured using MTT [3-(4,5-dimethyl-2-thiazolyl)-2,5-diphenyltetrazolium bromide] cell count kit (NACALAI TESQUE, INC., Kyoto, Japan) according to the manufacturer’s instructions. The absorbance (570 nm) of each sample was measured by a microplate reader, and the measured absorbance was corrected using a background control.
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10

Lung cancer and Leishmania assay protocol

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The lung adenocarcinoma cell line (A549) was obtained from the Japanese Collection of Research Bioresources (JCRB) Cell Bank, National Institute of Biomedical Innovation. Institute of Tropical Medicine, Nagasaki University supplied us with L. major, which was used as endorsed by the ethical board of the Institute of Tropical Medicine, Nagasaki University, Japan. M199 and Dulbecco’s Modified Eagle’s Media, kanamycin, dimethyl sulfoxide (DMSO), etoposide, miltefosine, fetal bovine serum, and MTT were obtained from Nacalai Tesque in Kyoto, Japan. The 96-well plates were purchased from Becton Dickinson (Franklin Lakes, NJ, USA). Solvents for the extraction, fractionation, and mass analysis were obtained from Sigma-Aldrich Inc., St. Louis, MO, USA.
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