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23 protocols using brain derived neurotrophic factor (bdnf)

1

Quantification of Inflammatory Markers in Cell Samples

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Antibodies for p65, p-p65, BDNF, claudin-5, occludin, caludin-1, iNOS, COX-2, and β-actin were purchased from Cell Signaling Technology (Beverly, MA). Enzyme-linked immunosorbent assay (ELISA) kits for cytokines were purchased from Ebioscience (San Diego, CA). 4′,6-Diamidino-2-phenylindole dilactate (DAPI) was purchased from Sigma (St. Louis, MO). QIAamp Fast DNA stool mini kit was purchased from Qiagen (Hilden, Germany). Limulus amoebocyte lysate (LAL) assays was purchased from Cape Cod Inc. (East Falmouth, MA). General anaerobic medium (GAM), BL, and DHL media were from Nissui Pharmaceutical Co. (Tokyo, Japan). MRS medium was purchased from BD (Radnor, PA).
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2

Hippocampal Protein Expression Analysis

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Protein was extracted from mice's hippocampal tissue. Protein lysates were separated by 12% SDS-PAGE electrophoresis and transferred onto polyvinylidene difluoride (PVDF) membranes. After blocking with 3% BSA for 1 h, the membranes were incubated with primary antibodies. CAMKII (Cell Signaling Technology, 7546, 1 : 500), P-CaMK-II (Cell Signaling Technology, 9546, 1 : 500), P-CREB (Cell Signaling Technology, 9198 s, 1 : 500), CREB (Cell Signaling Technology, 9197, 1 : 500), PKA (Proteintech, 55388-1-AP, 1 : 1000), NMDAR1 (Cell Signaling Technology, 5104 s, 1 : 1000), BDNF (Cell Signaling Technology, 47808, 1 : 1000), PSD95 (Cell Signaling Technology, #2507, 1 : 1000), GAPDH (Proteintech, 6004-1-lg, 1 : 2000) and Tubulin (Proteintech, 10094-1-AP, 1 : 2000) were used at 4°C overnight. The next day, blots were washed 4 times in TBST, followed by incubation with secondary antibodies for 1 h. After washing for 3 times, the blots were visualized using the Super Signal West Pico Chemiluminescent Substrate (Thermo Fisher Scientific Inc.). BDNF and pro-BDNF were normalized to Tubulin bands, and P-CERB and total CREB bands were taken as a ratio of Tubulin bands. All experiments were performed 3 times.
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3

Neurochemical Modulation in PTZ-Induced Seizures

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PTZ, MMP-9 and myricetin were purchased from Sigma-Aldrich (Merck KGaA, Darmstadt, Germany). PTZ was dissolved in freshly prepared saline prior to treatment (100 mg/ml). Antibodies against cleaved caspase-3 (cat. no. 9661; 1:1,000; Cell Signaling Technology, Inc., Danvers, MA, USA), BDNF (cat. no. PA5-15198: 1:2,000; Invitrogen; Thermo Fishes Scientific, Inc., Waltham, MA, USA), TrkB (cat. no. 4606; 1:1,000; Cell Signaling Technology, Inc.), GABAAR (cat. no. PA5-78386; 1:1,000; Invitrogen; Thermo Fisher Scientific, Inc.), MMP-9 (cat. no. 3852; 1:1,000; Cell Signaling Technology, Inc.) and GAD65 (cat. no. PA5-22260; 1:2,000; Invitrogen; Thermo Fisher Scientific, Inc.) were obtained and Santa Cruz Biotechnology, Inc. (Dallas, TX, USA) provided antibodies against apoptosis regulator B-cell lymphoma-2 (Bcl-2; cat. no. sc509; 1:1,000), apoptosis regulator Bcl-2-like protein 4 (Bax; cat. no. sc-7480; 1:1,000), Bcl2-associated agonist of cell death (Bad; cat. no. sc-8004; 1:1,000), anti-apoptotic regulator Bcl extra large (Bcl-xL; cat. no. sc-136132; 1:1,000) and β-actin (cat. no. sc-47778; 1:1,000). All other standard chemicals used in the current study were purchased from Sigma-Aldrich; Merck KGaA.
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4

Neuroinflammation Regulation by Molecules

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MGF (purity ≥98%) was purchased from Chengdu Desite Biotechnology (Chengdu, China). β-estradiol (E8875), dimethyl sulfoxide (DMSO), and LPS were purchased from Sigma-Aldrich (St. Louis, MO, United States). Progesterone was obtained from VETEC (V900699). The antibodies used for western blotting were as follows: Iba1/AIF-1 (E4O4W) (#17198), GFAP (E4L7M) (#80788), PSD95 (D27E11) (#3450), BDNF (#47808), iNOS (D6B6S) (#13120), anti-p-ERK1/2 (Thr202/Tyr204) (#9101), anti-ERK1/2 (#9102), anti-p-p38 MAPK (Thr180/Tyr182) (#4511), anti-p38 MAPK (#9212), and anti-p-JNK (Thr183/Tyr185) (#9251) were purchased from Cell Signaling Technology (Beverly, MA, United States). β-tubulin (#CW0098A) and β-actin (#CW0096M) were procured from CWBiotech (Beijing, China).
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5

Immunohistochemical Analysis of Rat Brain

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Animals were sacrificed after 2 weeks of treatment. Rats were anesthetized with 10% chloral hydrate and decapitated. The rat brains were fixed in 4% paraformaldehyde in PBS for 24 h at 4°C, and then dehydrated in a graded series of alcohol, placed in xylene until transparent and embedded in paraffin via treatment at 60°C oven. Brain tissues were cut to 4 mm-thick sections using a microtome. The sections were blocked in 3% H2O2 for 10 min at room temperature, and 3% normal goat serum (OriGene Technologies, Inc.), and then incubated with rabbit polyclonal antibodies against phospho cAMP response element-binding protein (pCREB; 1:800; cat. no. 9198; Cell Signaling Technology, Inc.), CREB (1:3,000; cat. no. 9197; Cell Signaling Technology, Inc.), BDNF (1:200; cat. no. ab6201; Abcam) at 4˚C overnight. HRP-labeled goat anti-rabbit secondary antibody (1:1,000; cat. no. TA140003; OriGene Technologies, Inc.) for 30 min at 37˚C and diaminobenzidine from the Streptavidin-Peroxidase kit (OriGene Technologies, Inc.) were used to visualize the signals. Hematoxylin was used for counterstaining for 1-2 min at room temperature. The controls included incubation without any primary or secondary antibodies at 37°C for 30 min. Finally, the sections were observed under a NIKON fluorescence microscope (magnification, x40, x200 and x400; Nikon Corporation).
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6

Hippocampal and Prefrontal Protein Analysis

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Western blotting of hippocampal and prefrontal cortex proteins was performed as described previously 12 , 19 (link). The antibodies used in the experiments were included as following, Goat anti-mouse IgG-HRP (#ZDR-5307, dilution 1:5000) and goat anti-rabbit IgG-HRP (#ZDR-5306, dilution 1:5000) antibodies were purchased from ZSGB-BIO. Anti-Akt (#9272, dilution 1:1000), p-Akt (Ser473) (#4060, dilution 1:1000), Bcl-2 (#3498, dilution 1:5000), BDNF (#47808, dilution 1:1000), TrkB (#4606, dilution 1:1000), p-TrkB (#4619, dilution 1:1000), Cleaved- Caspase3 (#9661, dilution 1:1000) and β-actin (#4970, dilution 1:3000) antibodies were provided by Cell Signaling Technology, Inc. Anti fibroblast growth factor 2 (FGF2) (#sc-136255, dilution 1:1000) antibody was provided by Santa Cruz Biotechnology, Inc. The expression of the target protein was detected and photographed in the Odyssey CLx infrared fluorescence imaging system (LI-COR Biosciences). The relative protein expression levels are quantified by the density-value of the bands and normalized to loading control.
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7

Western Blot and ELISA Analysis of BDNF

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Total protein was extracted using RIPA lysate. Protein concentration was measured with BCA protein assay kit (Pierce, Bonn, Germany) according to the manufacturer's instructions. Total cellular proteins were separated by 10% SDS-PAGE and transferred onto nitrocellulose membranes (EMD Millipore, Billerica, MA, USA). After blocking in 5% skim milk for 1 h, the membranes were incubated with primary antibodies (β-actin, A1978, 1:2,000; Sigma-Aldrich, St. Louis, MO, USA) (ERK, cat. no. 9102, 1:2,000; p-ERK, cat. no. 9101, 1:2,000; CREB, cat. no. 9197, 1:150; P-CREB, cat. no. 9191, 1:150; all from Cell Signaling Technology, Inc., Danvers, MA, USA) (BDNF, cat. no. ab108383, 1:1,200; Abcam, Cambridge, MA, USA) overnight at 4°C, followed by the incubation with goat anti-rabbit secondary antibodies (ERK, 1:2,000; CREB 1:150; BDNF 1:1,200) for 2 h at room temperature. Protein bands were visualized on X-ray film using enhanced chemiluminescence ECL substrate (Pierce).
The levels of BDNF were detected with enzyme-linked immunosorbent assay (ELISA) according to the manufacturer's instruction.
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8

Lavender Oil Neuroprotective Effects

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The lavender essential oil (LO) was provided by Yili Brother Biotech, Inc (Xinjiang, China). LO is extracted by steam distillation from Lavandula angustifolia grown in Xinjiang and harvested in August 2015. Linalool (LI, Figure 1) with a purity of 98.5% determined by HPLC was obtained from the National institutes for Food and Drug Control (ID: 4BJH-UDPM, Beijing, China). D-galactose (D-gal) and aluminum trichloride (AlCl3) were purchased from (Amresco Company, Solon, OH, USA). Assay kits of superoxide dismutase (SOD), glutathione peroxidase (GPX), malondialdehyde (MDA), and acetylcholinesterase (AChE) were purchased from Nanjing Jiancheng Biotechnology Institute (Nanjing, China). Rabbit antibodies to HO-1 and Nrf2 (1 : 1000, Abcam, USA) were form Abcam (Cambridge, MA, USA) and rabbit antibodies to CaMKII, p-CaMKII, BDNF, TrkB, β-actin, and Horseradish peroxidase- (HRP-) conjugated goat anti-rabbit IgG secondary antibodies were from Cell Signaling Technology (Boston, MA, USA). Protein extraction kit and BCA protein assay kit and ECL kit were from Cwbio (Beijing, China).
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9

Neuroprotective Molecular Mechanisms

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LPS, hyperoside, and 3-(4,5-dimethyl-2-thiazolyl)-2,5-diphenyltetrazolium bromide (MTT) were purchased from Sigma-Aldrich (St. Louis, MO, USA). Dulbecco's modified Eagle medium containing 10% fetal bovine serum (FBS) was purchased from Gibco (Carlsbad, USA). 100 U/ml penicillin and 100 mg/ml streptomycin were purchased from Sigma-Aldrich (St. Louis, MO, USA). LiCl and sonic hedgehog agonist SAg were purchased from Merck (San Diego, CA, USA). Primary antibodies against Bcl-2, Bax, caspase-3, BDNF, NGF, SIRT1, Wnt1, β-catenin, Shh, Patch, and GAPDH and secondary antibodies were all purchased from Cell Signaling (Boston, MA, USA).
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10

Immunohistochemical Analysis of Glial, Vascular, and Neuronal Markers in Mouse Brain

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For estimation of gliosis, angiogenesis, and neurogenesis, mice in group 3 (n=5-6) were used. For the mouse brain, a standard procedure was utilized for IHC staining on 30-μm sections mounted on Fischer Scientific Superfrost Plus charged slides. Briefly, the tissue sections were rinsed in 0.1 M phosphate-buffered saline (PBS) pH 7.4. Antigen retrieval was performed by heating the tissue in a 10 mM sodium citrate buffer at pH 6.0. Tissue sections were incubated for 1 hour in blocking solution (0.1% Triton-X, 10% normal goat serum in 1X PBS) and then incubated overnight in primary antibody at 4°C (GDF11/8 1:250; IBA-1(Fujifilm Wako pure chemical corporation, NCNP24) 1:300; GFAP-Cy3 (Sigma-Aldrich C9205) 1:300; CD 31 (ab28364) 1: 100), DyLight 594 labelled Lycopersicon Esculentum (tomato) lectin (Vector Laboratories)1:100, BDNF (1:100), MBP (1:100, cell signaling technologies, 78896S), synaptophysin (1:300, ab14692).
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