The largest database of trusted experimental protocols

6 protocols using sybr1 premix ex taqtm

1

Gene Expression Analysis of MC3T3-E1 Cells

Check if the same lab product or an alternative is used in the 5 most similar protocols
MC3T3-E1 cells were grown in a differentiation-inducing medium for 24 hours, and total RNA was isolated using Beyozol reagent (Beyotime). The RNA integrity was determined by separating the RNA on an agarose gel and quality was assessed by measuring the A260/A280 and A260/A230 ratio cutoff higher than 1.8 and 2.0, respectively. Two micrograms of total RNA were used for reverse transcription to synthesize cDNA with dNTP mix and RNase-free H2O, following the manufacturer's protocols. qRT-PCR was performed using SYBR1 Premix Ex TaqTM (Takara, Dalian, Japan). The qRT-PCR parameters were as follows: 95.0°C for 30 s, 39 cycles of 95.0°C for 5 s and 60.0°C for 30 s, and 95.0°C for 10 s, followed by a melt curve from 65.0 to 95.0°C at an increment of 0.5°C per 5 s. Three samples were obtained from three independent experiments, and each sample was analyzed in triplicate. The gene expression data were normalized to an internal control (GAPDH) and were analyzed using the comparative 2-ΔΔCq method only when amplification efficiency calculated using the standard curve of the mRNAs of interest and the internal mRNA was 90%~110% 32 (link). GraphPad Prism 7 was used to calculate the data as fold changes compared with the control group. The primer sequences used are shown in Table 1.
+ Open protocol
+ Expand
2

Osteogenic Differentiation Analysis in C2C12 Cells

Check if the same lab product or an alternative is used in the 5 most similar protocols
TRIzol reagent (Invitrogen) was used to isolate the total RNA according to the manufacturer’s instructions. Real-time PCR was performed with an ABI7900HT system using SYBR1 Premix Ex TaqTM (TaKaRa, China) after the reverse transcription reaction according to the manufacturer’s instructions. We used glyceraldehyde-3-phosphate dehydrogenase (GAPDH) as the internal control. Each sample was analyzed in triplicate. The primer sequences for C2C12 cells used in this study were as follows: GAPDH: forward 5′-GACTTCAACAGCAACTCCCAC-3′ and reverse 5′-TCCACCACCCTGTTGCTGTA-3′; ColI: forward 5′-GAGCTGGTGTAATGGGTCCT-3′, and reverse 5′-GAG ACCCAGGAAGACCTCTG-3′; Bsp: forward 5′-CAGGGAGG CAGTGACTCTTC-3′, reverse 5′-AGTGTGGAAAGTGTGGCG TT-3′; Ocn: forward 5′-AAGCAGGAGGGCAATAAGGT-3′ and reverse 5′-TTTGTAGGCGGTCTTCAAGC-3′; Runx2: forward 5′-GACTGTGGTTACCGTCATGGC-3′, reverse 5′-ACTTGGTT TTTCATAACAGCGGA-3′; ATF4: forward 5′-CCTGAACAGCGA AGTGTTGG-3′, reverse 5′-TGGAGAACCC- ATGAGGTTTCAA -3′; Osx: forward 5′-GGAAAGGAGGCACAAAGAAGC-3′, reverse 5′-CCCCTTAGGCACTAGGAGC-3′.
+ Open protocol
+ Expand
3

qRT-PCR Analysis of Osteogenic Markers

Check if the same lab product or an alternative is used in the 5 most similar protocols
The total RNA of cells was isolated using TRIzol reagent (Invitrogen) according to the manufacturer's instructions. First-strand cDNA was synthesized from 1 μg of total RNA by incubating for 1 h at 42°C with Superscript III reverse transcriptase (Invitrogen, Mulgrave, Australia) following oligo(dT) priming. After reverse transcription reaction, qRT-PCR was performed by LightCycler480 system (Roche, Mannheim, Germany) using SYBR1Premix Ex TaqTM (Takara, Dalian, China) according to the manufacturer's instructions. Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) was used as an internal control. Data were analyzed using the comparison Ct (2-ΔΔCt) method [51 (link)] and expressed as fold change compared to respective control. Each sample was analyzed in triplicate. The primer sequences used in this study were as follows:
GAPDH: forward,5′-GACTTCAACAGCAACTCC CAC-3′; reverse, 5′-TCCACCACCCTGTTGCTGTA-3′; Collagen I (Col I): forward, 5′-GAGCTGGTGTAA TGGGTCCT-3′; reverse, 5′-G AGACCCAGGAAGACC TCTG-3′; bsp: forward, 5′-AGTGTGGAAAGTGTGG CGT T3′; Ocn: forward, 5′-AAGCAGGAGGGCAATA AGGT-3′; reverse, 5′-TTTGTAGGC GGTCTTCAAGC-3′; and SATB2: forward, 5′-GCCGTGGGAGGTTTGATG ATT-3’; reverse, 5′-ACCAAGACGAACTCA- GCGTG-3′.
+ Open protocol
+ Expand
4

Extraction and qPCR Analysis of mRNA

Check if the same lab product or an alternative is used in the 5 most similar protocols
Total mRNA was extracted using Beyozol reagent (Beyotime, Shanghai, China). The concentration and purity of mRNA were assessed by NanoDrop-2000 (Thermo Fisher, United States). PrimeScript RT Master Mix (Takara, Dalian, Japan) was used for reverse transcription. For PCR amplification, a total of 2 μl cDNA product was used for subsequent RT-qPCR analysis using SYBR1 Premix Ex TaqTM (Takara). The reaction system includes 10 μl of Forget-Me-Not qPCR Master Mix (Biotium, United States), 1 μl primer, and 7 μl RNase Free H2O as well. CFX96 Touch Real-Time PCR Detection System (Bio-Rad, United States) was utilized for reaction process. The following are primer sequences for ALP, OCN, and Osterix (Supplementary Table S1).
+ Open protocol
+ Expand
5

C2C12 Mesenchymal Cell Signaling Pathway

Check if the same lab product or an alternative is used in the 5 most similar protocols
The C2C12 mesenchymal cells were obtained from the American Type Culture Collection (ATCC, Rockville, MD). The adenovirus-BMP2 (Adv-BMP2) and adenovirus-β-Gal (Adv-β-Gal) were provided by Dr. Jueren Lou (Institute of Biological Products, Shanghai, China). The Human TNF-α was purchased from PeproTech (300-01A; Rocky Hill, NJ). Real-time PCR was done via the ABI7900HT system using SYBR1Premix Ex TaqTM (DRR041A; Takara, Dalian, China). The anti-SATB2 (1:1000; SATBA4B10), anti-Lamin B (1:500; ab151735) and anti-TNF-α (1:600; ab34674) antibodies were obtained from Abcam (Cambridge, MA). The anti-GAPDH antibody (1:10000; sc-32233) was obtained from Santa Cruz Biotechnology (Santa Cruz, CA). The anti-phospho-p44/42 ERK (1:1000; #4370) and anti-total-p44/42 ERK (1:1000; #4695), anti-phospho-p38 (1:1000; #4631) and anti-total-p38 (1:1000; #8690), and anti-phospho-JNK (1:1000; #4668) and anti-total-JNK (1:1000; #9252) antibodies, the anti-P65 (1:1000; #8442) and anti-beta-actin antibodies (1:10000; #3700) were purchased from Cell Signaling Technology (Danvers, MA).
+ Open protocol
+ Expand
6

Quantification of NKX6.1 Gene Expression

Check if the same lab product or an alternative is used in the 5 most similar protocols
Total RNA was isolated from the tissue samples with Trizol reagent (Invitrogen, Carlsbad, CA) following manufacturer's instructions. The first-strand cDNA was synthesized by PrimeScript ® 1st strand cDNA synthesis kit (Takara, China). In the present study, qRT-PCR which was performed using SYBR1 Premix ExTaqTM (Takara) was applied to investigate the relative expression of NKX6.1. NADPH acted as the internal control. The primer sequences were as followed: NKX6.1 forward: 5'-AGGGCTCGTTTGGCCTATTCCG-3', reverse: 5'-AGAGGCTTATTGTAGTCGTCGT-3'; NADPH forward: 5'-CAGCCTCAAGATCATCAGCA-3', reverse: 5'-TGTGGTCATGAGTCCTTCCA-3' [13] . Relative expression of NKX6.1 was analyzed using 2 -ΔΔCt method.
+ Open protocol
+ Expand

About PubCompare

Our mission is to provide scientists with the largest repository of trustworthy protocols and intelligent analytical tools, thereby offering them extensive information to design robust protocols aimed at minimizing the risk of failures.

We believe that the most crucial aspect is to grant scientists access to a wide range of reliable sources and new useful tools that surpass human capabilities.

However, we trust in allowing scientists to determine how to construct their own protocols based on this information, as they are the experts in their field.

Ready to get started?

Sign up for free.
Registration takes 20 seconds.
Available from any computer
No download required

Sign up now

Revolutionizing how scientists
search and build protocols!