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156 protocols using anti cd3 fitc

1

Comprehensive T Cell Immunophenotyping

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To assess the quality of T cell isolation, cells were fluorescently stained with anti-CD45-V500, anti-CD3-FITC, anti-CD4-APC-H7, anti-CD8a-PE, anti-CD19-APC, anti-CD14-PerCP, and anti-CD56-PE-Cy7 antibodies (Beckton Dickinson, Franklin Lakes, USA). For monitoring T cell subsets (day 3 to day 8), cells were fluorescently stained with anti-CD3-FITC, anti-CD4-BV510, anti-CD8-PE-Cy7, anti-CD127-AlexaFluor®647, anti-CD25-PE, anti-CD69-APC-H7, and anti-LAG-3-BV421 antibodies (Beckton Dickinson, Franklin Lakes, USA). Briefly, cells were harvested, washed, resuspended in 1× phosphate buffered saline (PBS) at pH 7.4, and incubated with antibodies for 30 min at 4 °C. After antibody incubation, cells were washed with PBS, incubated with 7-aminoactinomycin (7-AAD) reagent 10 min prior to measurement and analyzed via flow cytometry as described below.
All cells were analyzed by flow cytometry using BD FACSCanto™ II (Beckton Dickinson, Franklin Lakes, USA). Dead cells and cell debris were excluded from the analysis based on 7-AAD fluorescence and scatter signals. Analysis was performed using Kaluza flow cytometry analysis software (Beckman Coulter, Brea, USA).
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Comprehensive NK Cell Receptor Analysis

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NK cell receptors were analyzed after staining with appropriate antibody cocktail: anti-CD56-PC7 (N901), anti-NKp30-PE (Z25), anti-NKp44-PE (Z231), anti-NKp46-PE (BAB281), from Beckman Coulter; anti-CD69-FITC (FN50), anti-CD45-APC (J33), anti-CD3-PCP (UCHT1), anti-CD3-FITC (UCHT1), anti-CD3-APC (UCHT1), anti-CD57-FITC (NK-1), anti-Granzyme-B-FITC (GB11), anti-HLA-DR-PE (TU-36), anti-CD8-APC-Cy7 (SK-1), anti-CD107a-FITC (H4A3), anti-Perforin-PE (δ69) from Becton Dickinson; anti-NKG2D-APC (BAT221) from Miltenyi Biotec from R&D Systems.
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Cytotoxicity Evaluation of CLL Cells

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HG3 and MEC-1 CLL cell lines (200 000 cells/mL) and primary CLL cells (2 × 106 cells/mL) with > 90% tumor B cells, were incubated alone or in coculture with HS-5 cells (50,000 cells/mL) for 48 h with the compounds at doses ranging from 0.1 to 15 µM. Cell cytotoxicity was quantified by double staining with Annexin-V conjugated to fluorescein isothiocyanate (FITC) and propidium iodide (PI) (eBiosciences, San Diego). Normal PBMCs were labeled simultaneously with anti-CD3-FITC, anti-CD19-Phycoeritrin (PE; Becton Dickinson, Franklin Lakes, NJ, USA) antibodies, and Annexin V-Pacific Blue (Life Technologies). Labeled samples were analyzed on an Attune focusing acoustic cytometer (Life Technologies). Cytotoxicity values were represented relative to untreated control. For analysis of cell viability due to an effect on cell proliferation and/or cell death , cells were cultured with the drugs for 48 h and 0.5 mg/mL MTT (3-(4,5-dimethylthiazolyl-2)-2,5-diphenyltetrazolium bromide) reagent (Sigma-Aldrich, St Louis, MO) was added for 2–6 additional hours before spectrophotometric measurement. Each measurement was made in triplicate. Values were represented using untreated control cells as reference.
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Identification of T Cell Subsets

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The blood and tumor tissues were collected, and the corresponding single-cell suspensions were generated. The following reagents were used for the identification of CD8+ T cell, CD4+ T cell, and MAIT in the blood and tumor: anti-CD3-FITC (#561798), anti-CD4-PB450 (#562891), anti-CD8-PE (#553033), anti-CD3-APC-A750 (#557596), anti-TCR beta-APC-A700 (#560705), and MR1 (#361106) (26 (link), 27 (link)); all these antibodies were purchased from Becton Dickinson (San Jose, CA, USA). Briefly, the cells were blocked using the isotype control antibodies. After washing, the fluorescence-conjugated antibodies were added into the single-cell suspensions and incubated for 30 min at room temperature. The cells were washed and resuspended. The labeled cells were determined using the CytoFLEX (Beckman Coulter, Brea, CA, USA), and data were analyzed using FlowJo cell analysis software (FlowJo, LLC, Ashland, OR).
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5

Multicolor Flow Cytometry for Lymphoid Populations

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Flow cytometry was performed using standard whole blood lysis clinical laboratory procedures using IVD reagents. Aliquots of the samples were labeled with anti CD3-FITC, anti CD4 PerCp, and anti CD8 APC (Beckton Dickinson, Mountain View, CA, USA). Analysis was performed on a BD FACScalibur using Cell-Quest software (Beckton Dickinson, Mountain View, CA, USA). Reported values are for the CD3+CD4+, CD3+CD8+, CD56+CD16+ and CD3+CD4+CD25+FoxP3+ lymphoid populations.
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6

Inflammation Marker Analysis in Blood

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Peripheral blood samples were collected for analysis of inflammation markers, before and after 8 weeks of intervention. The procedures performed for labeling CD3+ (anti-CD3 FITC) and CD4+ (anti-CD4 PerCP-CY5.5) as well as for labeling the specific monoclonal antibodies for the cytokines of interest [anti-interleukin (IL)-8 PE, IL-13 APC, IL-17 PE, IL-6 APC, IL-2 APC, IL-10 PE, tumor necrosis factor (TNF) APC] were previously described.33 (link)
All reagents used in the analyses were from Becton Dickinson, San Diego, CA.
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7

Characterization of NPM1-mutant CTL Phenotype

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NPM1mut-specific CTL products were characterized for phenotype by monoclonal antibody staining and flow cytometry. Anti-CD3 FITC, anti-CD4 PE, anti-HLA-DR PE, anti-CD8 APC, CDγδ FITC, anti-CD56 Pc5.5, anti-CD14 FITC, anti-CD56 PE, anti-CD3 Pc5.5, anti-CD19+ CD20 APC, anti-CCR7 FITC, and anti-CD45RA PE (Becton Dickinson, Franklin Lakes, NJ, USA) were employed.
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8

Murine Immune Cell Phenotyping

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The animal was placed in a restraining device thus only the tail was exposed for drawing blood. The tail was warmed by a heat lamp in order to dilate the vessels, sterilized with 70% ethanol and 1–2 ml blood was drawn from the caudal vein with a 23G needle, prior to sacrifice of the animals.
Mouse anticoagulant (100 μl, 10.0–12.5 IU/ml) was placed into three test tubes containing anti-CD3-FITC, anti-CD4-phycoerythrin (PE), anti-CD8-PE-Cy5 and anti-I-Ab-FITC, respectively (0.5 μl/106 cells; all from Becton Dickinson Biosciences, San Jose, CA, USA), mixed uniformly and allowed to stand for 30 min at room temperature. Whole blood cells were reacted with antibody and the blood cells were then lysed using a double volume of red cell lysate, following which the solution was immediately mixed evenly. After 15 min at room temperature, the mixture was centrifuged for 4 min at 187 x g to remove the supernatant liquid. The cells were resuspended in 1% paraformaldehyde. All data were acquired using FACScalibur (BD Biosciences) and analyzed using CellQuest Pro software version 4.0 (BD Biosciences).
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9

Isolation and Sorting of CD4+ T Cell Subsets

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All participants underwent leukaphereses performed as outpatients. PBMC were isolated and viably cryopreserved. Frozen PBMC were thawed and CD4 T cells enriched with the EasySep™ Human CD4 + T Cell Negative Selection Enrichment Kit (Stemcell). Cells were stained with Live/Dead Fixable Aqua (Life Technologies) and the following monoclonal antibodies cocktail: anti-CD3-FITC, anti-CD4-AlexaFluor700, anti-CCR7-PE-Cyanine7, anti-CD27-APC, anti-HLA-DR-APC H7, anti-CD57-Brilliant Violet 421, and anti-CD95-PE (Becton Dickinson) as well as anti-CD45RA-ECD (Beckman Coulter). HLA-DR- CD4 + T cell subpopulations were sorted on a FACS ARIA II flow cytometer (BD Biosciences) at >97% purity. Dry pellets were snap-frozen at −80 °C. Flow cytometry data were analyzed on FACSDiva v8.0.1 (BD Biosciences) and FlowJo v8.7 (Tree Star). Sorting schema is provided in Supplementary Fig. 2.
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10

PBMC Immunophenotyping by FACS

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Peripheral blood mononuclear cells (PBMCs) were analyzed by FACS using the FACSCalibur (Becton Dickinson and Co., Franklin Lakes, NJ, USA) as per previously described methods [13] . Briefly, blood was collected from each mouse, and then PBMCs were isolated using a Ficoll density gradient and stained with the fluorescence-labeled monoclonal antibodies (mAb), namely anti-CD3-FITC, anti-CD19-FITC, anti-CD11b-PE, anti-Mac-3-FITC, and isotype control antibodies (all purchased from Becton Dickinson and Co.).
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