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Chlorophenol red β d galactopyranoside

Manufactured by Roche
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Chlorophenol red-β-D-galactopyranoside is a chromogenic substrate used for the detection and quantification of β-galactosidase activity. It undergoes a color change from yellow to purple upon hydrolysis by the enzyme, allowing for easy visual or spectrophotometric analysis.

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17 protocols using chlorophenol red β d galactopyranoside

1

Yeast Estrogen Receptor Transactivation Assay

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The yeast estrogen receptor assay (YES-assay) was provided by Dr. J.P. Sumpter (Brunel University, Uxbridge, UK; Routledge & Sumpter, 1996) and was used to determine the relative transactivation activity of the human ERα in response to test substances as previously described35 (link). Briefly, Saccharomyces cerevisiae stably transfected with a human ERα construct and an estrogen responsive element fused to the reporter gene lacZ encoding for β-galactosidase were treated with the test substances for 48 h. The β-galactosidase enzymatic activity was measured in a colorimetric assay using the substrate chlorophenol red β-d-galactopyranoside (Roche Diagnostics, Mannheim Germany). Formation of chlorophenol red was measured at 540 nm. For the test, all compounds were diluted in DMSO. 17β-estradiol (10 nM; Sigma, Deisenhofen, Germany) served as positive control and DMSO was used as vehicle control. All compounds, were dose dependently tested in a concentration range of 0.01–100 µM, using technical quadruplicates and biological triplicates.
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2

Luciferase Assay with miRNA Transfection

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Cells were cotransfected with luciferase reporter constructs and internal control plasmid, pSV-β-galactosidase (Promega) in the presence of miR-593-5p or miR-SC. After cell lysis using Glo Lysis Buffer (Promega), luciferase activity was measured with Steady-Glo Luciferase Assay (Promega) by a Wallac 1420 Multilabel Counter (PerkinElmer). β-Galactosidase activity was measured using chlorophenol red-β-D-galactopyranoside (Roche Applied Science) in a reaction buffer (60 mM Na2HPO4, 40 mM NaH2PO4, 1 mM MgSO4, 10 mM KCl, 50 mM 2-mercaptoethanol, pH 7.0) to normalize luciferase activity.
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3

Synthetic AHL Compound Characterization

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Non-native AHLs were synthesized as described previously (Mattmann et al., 2011 (link)). N-(3-oxododecanoyl) L-homoserine lactone (OdDHL) was purchased from Sigma–Aldrich. Chlorophenol red-β-D-galactopyranoside (CPRG) was purchased from Roche.
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4

Evaluating Mincle Signaling in Pneumocystis Interactions

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To determine Mincle based cellular signaling following interaction with Pneumocystis, T-cell hybridoma line B3Z containing the lacZ β-galactosidase reporter and control constructs were employed as previously described (39 (link)). Briefly, 1 X 105 B3Z/FcRγ or B3Z/FcRγ expressing Mincle cells per well were cultured in a 96-well culture plate and incubated for 18 h with Pc organisms at the concentrations indicated. This cell based reporter construct mediates generation of lacZ activity following ligation of Mincle with relevant ligands and subsequent FcRγ activation. The lacZ activity was measured in total cell lysates using chlorophenol red-β-D-galactopyranoside (Roche) as a substrate with the OD 560–620 being measured using a microtiter plate reader (Molecular Devices).
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5

Photoactivation Assay for B3Z Clones

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The indicated B3Z clones were photoactivated using 470 nm LEDs for 10 s every 5 min for a total period of 1 h. After three additional hours of culture, cells were washed twice in phosphate-buffered saline (PBS) and lysed in 100 μL per well of CPRG buffer (PBS + 9 mM MgCl2 + 0.125% NP40 + 100 μm β-mercaptoethanol + 0.15 mM chlorophenol red- β-D-galactopyranoside (Roche, #10884308001)). Plates were incubated in the dark at room temperature for 30 min to 1 h and the optical density was read at 570 nm (reading at 620 nm was used as reference and subtracted).
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6

Antiprotozoal Activity Evaluation of Trypanosomes

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The evaluation of the antiprotozoal activity against trypanosomes was carried out using the recombinant strain Tulahuen clone C4 of T. cruzi trypomastigotes (ATCC, Manassas, VA, USA). This strain expresses the β-galactosidase enzyme used as a reporter to assess the viability of the trypanosomatid [41 (link)]. The parasites were maintained at 37 °C under a 5% CO2 atmosphere in RPMI-1640 culture medium with L-glutamine, 4-(2-Hydroxyethyl)-piperazine-1-ethanesulfonic acid (HEPES) buffer, NaHCO3, 10% FBS, and 0.05% gentamicin (50 mg/mL) as supplements. Vero cells were cultured for 24 h, and one day prior to the experiment, the cells were infected with trypomastigotes. After additional 24 h of infection, bufadienolides were dissolved in DMSO and tested at four different concentrations by duplicate for five days. Benznidazole was used as the positive control. To determine antitrypanosomal activity, 25 µL of chlorophenol-red-β-D-galactopyranoside (Roche Applied Science) (900 µM) were added to each well and allowed to react with the β-galactosidase of the remaining living parasites for 4.5 h. Absorbance was calculated at 570 nm using a microtiter plate reader (Sinergy HT, BioTek Instruments Inc, Winooski, VT, USA).
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7

Luciferase Reporter Assay in HEK293 Cells

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For reporter gene assays, HEK293 cells were seeded into 24-well plates at a density of 0.5–1 × 105 cells/well. The next day, DNA plasmids, including ERK5 (WT or mutant) and reporter genes (total 1 μg/well), were combined with Lipofectamine 2000 (1 μl/well) and mixed gently in serum-free DMEM (50 μl) and added to the culture plates for 4–6 h. Cells were then serum starved overnight and incubated with EGF in the presence or absence of U0126 at 37°C for 6 h. Cells were lysed in lysis buffer (1% Triton X-100, 110 mM K2HPO4, 15 mM KH2PO4, pH 7.8) (100 μl/well) and centrifuged to remove cell debris. The resulting supernatant (50 μl/tube) was mixed with 300 μl assay buffer (25 mM Gly-Gly, 15 mM MgSO4, 5 mM ATP, 10 mM NaOH). The luciferase reaction was started by the addition of 100 μl luciferin solution (150 μM), and luciferase activity was measured using a luminometer (LB9575; Berthold, Bad Wildbad, Germany). As an internal control, β-actin promoter-driven β-galactosidase activity was measured to normalize for transfection efficiency. The cell lysate (20 μl) was incubated with 100 μl reaction buffer (100 mM Hepes, 150 mM NaCl, 2 mM MgCl2, pH 7.0) supplemented with chlorophenol red-β-D-galactopyranoside (2 mg/ml) (Roche, Indianapolis, IN), and the absorbance at 595 nm was measured.
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8

PPARγ Transactivation Assay Protocol

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The assay
was performed as previously described.49 (link) A DNA fragment encoding the LBD (residues 204–505) of mouse
PPARγ2 (GenBank U09138) with BamHI and SalI sites at the ends was amplified
by PCR using genomic DNA from mouse 3T3-L1 cells as a template and
inserted into the pSG424 plasmid at the BamHI and SalI sites to construct
pGal4-PPARγ LBD. pGal4-PPARγ LBD and pUAS-tk-luc were
cotransfected into HepG2 or 3T3-L1 cells in separate experiments using
HilyMax (Dojindo). The PPARγ agonist activity was determined
via luciferase activity using a Luciferase Assay System according
to the manufacturer’s protocol (Promega). The β-galactosidase
activity was determined using chlorophenol red-β-d-galactopyranoside
(Roche). Relative luciferase activities were normalized to the β-galactosidase
activity.
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9

ERAP1 Trimming Activity Assay

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ERAP1 knock-out 293T (293T E1KO) cells were transfected using the FuGENE 6 Transfection Reagent (Promega, UK).7 (link) For assessment of ERAP1 trimming activity, 293T E1KO cells were transfected with 1 µg total DNA, consisting of 0.5 µg PT ERAP1, 0.5 µg E320A non-functional ERAP1, or 0.25 µg of each MM allotype-encoded ERAP1, together with 0.25 µg H2-Kb and 0.25 µg SHL8 or the extended precursor SRG-SHL8. For assessment of ERAP1 amino acid specificity, 293T E1KO cells were transfected with 0.1 µg total DNA, consisting of 0.05 µg MM allotype-encoded ERAP1, 0.025 µg H2-Kb, and 0.025 µg X-SHL8. All transfected cells were incubated for 24 h at 37 °C. Presentation of trimmed SHL8 and activation of the LacZ-inducible B3Z T cell hybridoma were assessed by measurement of intracellular LacZ activity using the substrate chlorophenol red-β-d-galactopyranoside (Roche, UK).10 (link)
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10

Synthetic AHL Compounds Screening

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The non-native AHLs examined in this study were synthesized and purified as described previously.[15a (link), 16a-c (link)] A full listing of these compound structures is shown in Figure S1. OdDHL was purchased from Sigma–Aldrich, and BHL was purchased from Cayman Chemical Company. Chlorophenol red-β-D-galactopyranoside (CPRG), the substrate for the β-galactosidase assays, was purchased from Roche. Stock solutions of compounds were prepared in DMSO (at 100 mM) and stored at −20 °C in sealed vials. The amount of DMSO used in small molecule screens did not exceed 1% (v/v). All synthetic compounds were tested in triplicate, and ≥ 3 separate trials were performed using unique cultures. No compound had an effect on bacterial growth over the concentrations tested as gauged by monitoring OD600 over the time course of the assays. IC50 and EC50 values were calculated with GraphPad Prism software (v. 4.0) by using a variable slope sigmoidal curve fit.
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