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11 protocols using 5 bdbd

1

Neurophysiological Modulation Protocol

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IVM (cat. no. NDC 55529-012-01, Norbrook Laboratories, Ltd, Newry, North Ireland, UK), Nicotine (cas. no. 54-11-5, Sigma-Aldrich, St. Louis, Missouri, USA), Hexamethonium bromide (cas. no. 55–97-0, Cayman Chemical Company, Ann Arbor, Michigan, USA), L-DOPA (cat. no. PHR1271, Sigma-Aldrich, St. Louis, Missouri, USA), and 5-(3-Bromophenyl)-1,3-dihydro-2H-benzofuro[3,2-e]-1,4-diazepin-2-one (5-BDBD) (cat. no. T22518, TargetMol, Wellesley Hills, Massachusetts, USA) were dissolved in stock solutions and then diluted into ACSF at specified concentrations (0.1–100 µM IVM, 300 nM Nicotine, 200 µM Hexamethonium, 10 µM L-DOPA, and 10 µM 5-BDBD). Drugs brain slice administration used either gravity-based flow system or peristaltic pumps (1–2 ml/min).
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2

P2X4R and p38-MAPK Mediate ATP-Induced BDNF Release

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BV2 microglial cells (kindly provided by the Neurology Laboratory, the First Affiliated Hospital of Chongqing Medical University) were cultured in DMEM-F12 supplemented with 10% FBS, 100 U/ml penicillin, and 100 U/ml streptomycin at 37 °C in a humidified environment containing 5% CO2. Cell cultures were stimulated with ATP at a 50 μM concentration for distinct time-points, i.e., 0 h, 30 min, 1 h, 2 h and 3 h. This concentration of ATP has been verified to activate the P2X4Rs but not the P2X7Rs [6 (link)]. To examine the role of P2X4Rs and p38-MAPK in the ATP-evoked release and synthesis of BDNF, beginning 15 min before ATP stimulation, the cells were treated with 5-BDBD (20 μM, Sigma), an antagonist of the P2X4Rs, and SB203580 (10 μM, MCE), a p38-MAPK inhibitor. ATP was applied for 2 h [10 (link), 16 (link)].
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3

ATP-Induced Purinergic Receptor Modulation

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ATP, PSB-12062, and 5-BDBD were procured from Sigma Aldrich. U73122, MRS2500, ARC-118925, MRS2578, NF340, A438079, Ro0437626, MRS2211, and ivermectin were procured from Tocris. Receptor antagonists, inhibitors, and ivermectin were applied to cells 30 min before ATP challenge.
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4

Intrathecal Injection of Neuroprotectants

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Drug administration was performed 30 min after surgery. Furosemide (Fur; 30 nmol), 5-(3-Bromophenyl)-1,3-dihydro-2H-benzofuro[3,2-e]-1,4-diazepin-2-one (5BDBD; 30 nmol), staurosporine aglycone (K252a; 30 nmol), minocycline (Mino; 30 nmol), brain-derived neurotrophic factor (BDNF; 3 ng/10 μL), BDNF + Mino (3 ng/10 μL+ 30 nmol) were respectively injected into the spinal cavity by intrathecal injection. Either normal saline or DMSO was used as the vehicle control in different sets of animal groups. K252a, BDNF, 5BDBD, and Mino were purchased from Sigma-Aldrich (St Louis, MO, USA).
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5

Stimulating Bovine Renal Cells with Glucose Treatments

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The MDBK cells were maintained in Dulbecco’s modified eagle medium (DMEM) containing 5% fetal bovine serum (FBS) (ThermoFisher, Shanghai, China), 100 U/mL penicillin, 100 μg/mL streptomycin. Immortalized bovine renal glomerulus epithelial (MDBK) cells were incubated at 37 ℃ and 5% CO2. Referencing a previous study [26 (link)], we stimulated the MDBK cell with five treatments to mimic abnormal glycemia, including low glucose (LG), 2.5 mM glucose for 48 h; normal glucose (NG), 5 mM glucose for 48 h; high glucose (HG), 25 mM glucose for 48 h; reducing glucose (RG), 25 mM glucose for 24 h followed by 2.5 mM glucose for 24 h; increasing glucose (IG), 2.5 mM glucose for 24 hg followed by 25 mM glucose for 24 h (Figure 1A). In the experiments involving inhibitors, the MDBK cells (60~70% confluent) were pretreated for 30 min with each inhibitor dissolved in 100% dimethyl sulfoxide (DMSO; Sigma-Aldrich) and then diluted in a culture medium. N-acetyl-L-cysteine (NAC) was purchased from Solarbio Technology Co., Ltd., Beijing, China, and C17H11BrN2O2 (P2X receptor family 4 (P2X4) receptor antagonist, 5-BDBD) and MCC950 sodium salt (NOD-like receptor thermal protein domain-associated protein 3 (NLRP3) inflammasome inhibitor, MCC950) were purchased from Sigma Chemical Co., St. Louis, MO, USA.
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6

P2X4-NLRP3 Pathway Impact on PND

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To understand the effect of P2X4-NLRP3 pathway on PND, we treated the animals with the P2X4R-selective antagonist 5-(3-bromophenyl)-1,3-dihydro-2H-be-nzofuro[3,2-e]-1,4-diazepin-2-one (5-BDBD) (Sigma-Aldrich, USA) (28 mg/kg, i.p.) or saline 3 consecutive days after the surgery [18 (link)]. All the animals were randomly divided into four groups: (1) the control group (CON); (2) the control + 5 − BDBD group (CON + 5 − BDBD); (3) the surgery group (SUR); and (4) the surgery + 5 − BDBD group (SUR + 5 − BDBD). To avoid the putative confounding effects of behavioral tests on inflammatory markers, some animals in each group were sacrificed 3 days after the surgery for biochemistry on the brain tissue, while the others were subjected to behavioral tests. The experimental process is illustrated in Figure 1.
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7

Investigating P2X4R/BDNF Pathway in NTG-Induced Hyperalgesia

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To understand the effect of the P2X4R/BDNF pathway on NTG-induced hyperalgesia, we treated the animals with the P2X4R-selective antagonist 5-BDBD (Sigma-Aldrich, USA) and the inhibitor of TrkB receptors ANA-12 (Sigma-Aldrich, USA) daily for 11 days; on days 3, 5, 7, 9, and 11, the mice were injected with NTG as described above. 5-BDBD (28 mg/kg, i.p.) and ANA-12 (1 mg/kg, i.p.) were administered immediately prior to the administration of NTG [10 (link), 11 (link)].
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8

Investigating Purinergic Signaling in Mast Cell Activation

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We used the following chemicals: ATP disodium salt (Sigma-Aldrich, St. Louis, MO, United States), PPADS (20 μM, Abcam, USA, a non-selective P2 purinergic receptor antagonist), NF449 (1 μM, Cayman, USA, P2X1R antagonist), AF-353 (0.1 μM, donated by China Pharmaceutical University, P2X3R antagonist), 5-BDBD (10 μM, Sigma-Aldrich, United States, P2X4R antagonist), AZ10606120 (1 μM, Tocris Bioscience, USA, P2X7R antagonist), BzATP (30 μM, Alomone Labs, Israel, P2X7R agonist), recombinant mouse SCF protein (10 ng/mL, R&D Systems, USA), penicillin and streptomycin (100 μg/mL; Gibco, USA), fibronectin (30 μg/mL; Sigma-Aldrich, United States), Fluo 4-AM (Solarbio, China, calcium indicator), Histamine ELISA Kit (Yifeixue, China), IL-1β ELISA Kit (Yifeixue, China), Trizol (Vazyme Biotech, China), HiScript II Q RT SuperMix for qPCR (Vazyme Biotech, China), Taq MasterMix (Vazyme Biotech, China), AceQ qPCR SYBR Green Master Mix (Vazyme Biotech, China), ATP Content Assay Kit (Yifeixue, China), salicylic acid (Yuanye Biotech, China), aspirin (Yuanye Biotech, China), Rabbit Anti-P2RX7 antibody (Bioss, China)
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9

Calcium Signaling Experiments in Cells

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BSA, EGTA and reagents for producing Ca2+ solutions were from Amresco (Solon, OH, USA). Fetal bovine serum (FBS) was purchased from Bovogen Biologicals (East Keilor, Melbourne, Australia) and heat inactivated at 56 °C for 30 min before use. 2-APB, U-73122 and UDP were from Cayman Chemical (Ann Arbor, MI, USA). Primers for RT-PCR were from Integrated DNA Technologies (Coralville, IA, USA). 5-BDBD, ADP (pre-treated with hexokinase as per [41 (link)]), ATP, BAPTA-AM, BzATP, hexokinase from Saccharomyces cerevisae, ivermectin, MEM non-essential amino acid solution, paraformaldehyde, paroxetine, phosphate buffered saline (PBS), poly-D-lysine hydrobromide (5 µg∙mL−1 working stock), pluronic F-127, saponin, suramin and UTP were from Sigma-Aldrich (St. Louis, MO, USA). DMEM/F12 medium, ExoSAP-IT, Fura-2 AM, GlutaMAX, penicillin-streptomycin and 0.05% trypsin-EDTA were from ThermoFisher Scientific (Melbourne, Australia). 2MeSADP, AR-C118925, thapsigargin and TNP-ATP were from Tocris Bioscience (Bristol, UK).
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10

Investigating ICH Progression using P2X4R and TrkB Inhibitors

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Drug administration consisted of 5-BDBD, a P2X4R inhibitor, which was purchased from Sigma-Aldrich and diluted to 1.25 mg/mL in 0.5% methylcellulose. The optimal 5-BDBD dose was evaluated (Figure S4). The 5-BDBD at 3 mg/kg/day or an equal volume of vehicle was administered via oral gavage 30 min after ICH and was subsequently administered once daily for 7 consecutive days. ANA-12 was obtained from MedChem Express (Monmouth Junction, NJ, USA) and was diluted in DMSO. The optimal dose of ANA-12 was based on a previous report [25 (link), 37 (link)]. The mice received 0.5 mg/kg/day of ANA-12 intraperitoneally. The first injection was performed 1 day before ICH and was subsequently administered daily for 7 days.
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