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Ssdna assay kit

Manufactured by Thermo Fisher Scientific

The SsDNA assay kit is a laboratory tool used for the quantitative detection and analysis of single-stranded DNA (ssDNA) molecules. The kit provides the necessary reagents and protocols to measure the concentration of ssDNA in a sample. It is designed to support various applications in molecular biology and genomics research.

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3 protocols using ssdna assay kit

1

Single-indexed cDNA Library Generation

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Single-indexed cDNA libraries were generated using the SMARTer Stranded RNA-Seq Kit (Clontech Inc.) in accordance with the manufacturer’s instructions. Fluorescent measurement of DNA concentrations in each library was performed using Qubit dsDNA BR and ssDNA assay kit (Thermo Fischer Scientific).
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2

DNA Methylation Analysis Protocol

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A 20 μL DNA sample was transformed according to the instructions of the EZ DNA Methylation-Gold Kit (Zymo Research), and 22 μL M-Elution Buffer was added to the column matrix to elute DNA. PCR was performed in a thermal cycler with the lid temperature set at 105 °C. Thermal cycling condition was as follows: (1) 98 °C for 10 min; (2) 64 °C for 1 h 30 min, 1 h 50 min, 2 h 10 min, or 2 h 30 min; and (3) Hold at 4°C. The converted DNA was purified according to the cycle-Pure Kit instructions (Omega), and finally, 7 μL elution buffer was added. The single-stranded DNA (ssDNA) Assay Kit and Qubit 3.0 (Thermo Fisher) were used to determine the concentration of ssDNA.
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3

Iodide Uptake Assay for NIS Activity

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The iodide uptake assay was performed as described previously (29 (link)). In brief, 293T cells were seeded in 12-well plates, which contained sterilized cover slips (WHB Biotech), incubated at 37°C for 24 h, and transiently transfected alone or co-transfected with WT or mutant pEGFP-N2 plasmids. 48 h after transfection, the 293T cells were washed once in serum-free DMEM medium and incubated for 1 h in 1 ml serum-free medium containing 131I at 5 KBq/ml as the only source of iodide. For the inhibition of NIS-mediated uptake, NaClO4 (final concentration 1 mM) was included in parallel incubations (30 (link)). The cells were washed briefly in Hank’s Balanced Salt Solution (HBSS) buffer and then incubated with 1 ml HBSS for 5 min. The cells were solubilized by the addition of 1 ml 1 M NaOH, and the radioactivity was measured using a γ counter (GC1200, Anhui, China). DNA was determined by the Qubit Fluorometer using ssDNA Assay Kit (Q10212, Thermofisher). Each value represents the mean ± SD of picomoles 131I per microgram of DNA of three independent experiments done in triplicate.
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