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10 protocols using macsmix

1

Isolation of endometrial mesenchymal stem cells

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eMSC were isolated according to our previously published protocol14 (link). Briefly, endometrial tissues from hysterectomy sample were carefully scraped off the underlying myometrium. Both hysterectomy and curette tissues were mechanically minced and digested with 0.5% collagenase type I and 40 μg/ml deoxyribonuclease type I (both Worthington Biochemical Corporation) in Dulbecco’s modified Eagle’s medium (DMEM/F12) for 90 and 60 minutes, respectively in a humidified incubator at 37 °C on a rotating MACSmix (Miltenyi Biotech). The tissue digest was filtered through 40 μm cell strainer (BD Biosciences) to separate the epithelial gland fragments and undigested tissues. The red blood cells in the filtrate were separated from the single stromal cells by density gradient centrifugation using Ficoll-Paque (GE healthcare Bio-science). eMSC were obtained by incubating the stromal cells in Phycoerythrin (PE)-conjugated anti-human SUSD2 (10 μg/ml, BioLegend)) in 0.5% FCS/PBS (bead medium) and anti-PE magnetic-activated cell sorting microbeads (Miltenyi Biotec) for 30 minutes each in the dark on ice. The conjugated pellet was resuspended in bead medium and applied to a Miltenyi column (Miltenyi Biotec, #130-042-201) in a magnetic field. The separated cells, containing the SUSD2+ eMSCs in the column were eluted in bead medium and the cells counted.
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2

Parasite Synchronization and Protein Extraction

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Parasite cultures were synchronized to the ring stage by the 5% sorbitol method [28 (link)] and incubated for approximately 24 hours until parasites developed to the trophozoite stage. iRBCs were incubated with 0.2 mg/mL proteinase K in incomplete medium (ICM) (Ht 12.5%) at 37°C for 15 min using a tube rotator (MACSmix; Miltenyi Biotec, Germany), washed once with ICM, and then incubated with 4 mM Pefabloc solution (Roche, Switzerland) at 37°C for 2 hours to inactivate proteinase K. Proteins were extracted from parasite-iRBC essentially as described above except that the parasite pellets were treated with 2% SDS after the freezing and thawing process. Additionally, PBS containing cOmplete, 1 mM EDTA and 4 mM Pefabloc was used instead of PBS/PI-EDTA. Finally, protein extracts corresponding to 3.8 × 107 parasite/lane were separated using 5–20% gradient SDS-polyacrylamide gels.
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3

Tissue Dissociation for Single-Cell Analysis

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Tissues were cut into 2-4 mm3 segments and underwent cell lysis using gentleMACS (130-093-235; Miltenyi Biotec Germany) and MACSmix (130-090-753; Miltenyi Biotec Germany) in the mixed enzyme solution (4.7 mL Medium, 200 µL Enzyme H, 100 µL Enzyme R, and 25 µL Enzyme A). The lysate was resuspended and filtered through a 70-µm cell strainer (130-098-462; Miltenyi Biotec Germany). Cells were collected by centrifuging (300 × g for 7 min at 4 °C) and resuspended at 700–1200 cells/µl. The entire mixed cell populations were analyzed further without sorting or enriching for particular cell subtypes.
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4

Assessing IL-10 Production in Stimulated Tonsillar Lymphocytes

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Live CD4+ human tonsillar lymphocytes were stained with the anti-human IL-10 catch reagent (Miltenyi) at 9 million cells per 100 µl. After 10 min on ice, the cells were diluted 1:20 in RPMI supplemented as above. Cells were stimulated with PMA (100 ng/ml) and ionomycin (500 ng/ml) and incubated for 2 h in a 37°C incubator with 5% CO2, rotating slowly using a MacsMix (Miltenyi). Cells were then stained as above using the anti-human IL-10 detection antibody (Miltenyi).
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5

Cytokine Secretion Assay for Pentamer+ CD8+ T Cells

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The cytokine secretion assay on pentamer+ CD8+ T cells was performed as described previously (29 (link)). Briefly, PBMCs were coupled with capture reagents (Cytokine Secretion Assay kit, Miltenyi Biotec, Auburn, AL, USA) for human IFN-γ and TNF-α under stimulation from the peptide mixture. The cells were incubated in a closed tube for 45 min at 37 degrees Celsius under slow continuous rotation using the MACS mix (Miltenyi Biotec). After a washing step, cells were resuspended in cold medium containing IFN-γ and TNF-α detection antibodies. Subsequently, the cells were resuspended in MACS buffer containing antibodies specific for surface markers, including pentamer, and flow cytometry was performed on a BD LSR II cytometer.
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6

Biotinylation and Affinity Isolation of Protein Interactors

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MDM2-GST was biotinylated by reaction with NHS-PEG4-Biotin (Thermo Fisher). Library-expressing and reacted cells were labelled with 2 nM biotin-MDM2 at 4°C for 1 hour in 15 mL PBS/BSA and cells were washed once with PBS/BSA to remove weakly-bound and residual biotin-MDM2. Labelled cells were incubated with Dynabeads MyOne Streptavidin T1 (Thermo Fisher) in a 1:1 ratio with end-over-end rotation at 30 rpm using MACSmix (Miltenyi Biotec). Following incubation, magnetic beads were isolated by application of a magnetic field and beads washed twice with 15 mL PBS/BSA. DNA from bound cells was isolated as follows: beads were resuspended in 250 μL buffer P1 from the Qiaprep spin miniprep kit (Qiagen), bound cells lysed with 250 μL buffer P2, and neutralized with 350 μL buffer. After centrifugation, the supernatant was applied to a Qiaprep column and after washing with buffer PE, DNA was eluted with 30 μL H2O (yielding approximately 100 ng DNA) and re-transformed into electrocompetent methionine auxotrophic E. coli.
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7

Isolation of Endometrial Mesenchymal Stem Cells

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Endometrial tissues were minced with scissors and digested using 5% collagenase type II and 40 µg/ml deoxyribonuclease type I (DNAse I) (Worthington-Biochemical Corporation) at 37 °C in Dulbecco’s modified Eagle’s Medium/F12 medium (DMEM/F12) containing 15 µM Hepes buffer (Invitrogen) in a humidified incubator at 37 °C on a rotating MACSmix (Miltenyi Biotech) for 60–90 minutes. Dissociated stromal cells were separated from collagenase resistant epithelial cells (as clumps) using a 40 µm sieve (BD Bioscience-Durham) and red blood cells removed by density gradient centrifugation using Ficoll-Paque (GE Healthcare Bioscience-Bio-Sciences AB) as previously described44 (link). Single cell suspensions of stromal cells were incubated with PE-conjugated SUSD2 (formerly W5C5) antibody (2 µg/ml) (Biolegend) for 30 minutes at 4 °C followed by incubation with anti-PE labelled magnetic beads (Miltenyi Biotec) for 20 minutes and SUSD2+ eMSC were selected using a column and magnet (Miltenyi Biotec). SUSD2+ eMSCs were cultured in DMEM/F12 medium containing 10% Fetal Calf Serum (FCS) (Invitrogen), 1% antibiotic-antimycotic (Life Technologies) and 2 mM glutamine (Life Technologies) for 2–4 passages. We have previously shown that this protocol isolates eMSC which robustly express the typical MSC markers when cultured (ie CD29, CD44, CD73, CD90, CD105 > 90%; CD31, CD34, CD45 < 5%).
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8

Platelet Suspension Culture Optimization

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We resuspended the washed platelets in M199 (ThermoFisher Scientific, Waltham, MA, USA) cell culture medium without added substances. We used a rotator designed to be used in a cell culture incubator (MacsMix, Miltenyi Biotec, Bergisch Gladbach, Germany) to prevent platelet sedimentation during the suspension culture. Tubes containing the platelet suspension were placed properly in the adaptor of the rotator and set to gentle rotation. The rotator and the culture tubes were then put into a cell culture incubator for six hours. Before starting a culture, an aliquot of platelet suspension in liquid medium was collected, and the platelet count was measured in triplicate using the automated hematology analyzer (Coulter counter, Advia 2120i, Siemens). After six hours of culture, platelet counts were measured in triplicate and compared to the initial count.
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9

Menadione Cytotoxicity in Hepatocytes

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Hepatocytes were diluted to 4×106 cells/mL using Kreb-Henseleit solution, pH 7.4, and rotated on a MACSMIX (Miltenyi Biotec) rotator placed in a cell culture incubator (5% CO2 at 37° C) to maintain the cells in suspension. Hepatocytes were treated with increasing concentrations of menadione (0, 100, 200, 300, 400, 500, and 600 μM) for 2 h before being assayed for viability using trypan blue exclusion. Menadione was solubilized in dimethylformamide (DMF). DMF was also used as the vehicle control and total DMF in treated cell suspensions was 0.05% by volume for all treatment experiments.
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10

Isolation of Endometrial Mesenchymal Stromal Cells

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Endometrial biopsies were processed and single-cell suspensions of eMSC obtained as described previously. 6 Briefly, finely minced endometrial tissue was enzymatically and mechanically digested in Dulbecco's modified Eagle's medium (DMEM/F12) supplemented with collagenase type I and DNase I (Worthington Biochemical Corporation, USA) at 37°C on a rotating MACSmix (Miltenyi Biotec, USA) for 60 min. The digested tissue was filtered through 40 µm strainers (Becton Dickinson, BD, USA) to remove gland fragments, washed, red blood cells removed using Ficoll-Paque (GE healthcare Bio-science, USA) density gradient separation at 1500 rpm for 15 min, and the interface containing stromal cells was washed in DMEM/F12/ 10% fetal calf serum (FCS, Invitrogen, USA) and 1% primocin (Life Technologies, USA). Single-cell suspensions were re-suspended in separation buffer (0.5% FCS/PBS), and incubated with 10 µg/ml phycoerythrin (PE)-conjugated anti-human SUSD2 (BioLegend, USA) in the dark at 4°C for 30 min. Cells were then washed, the cell pellet resuspended in 20 µl of anti-PE magnetic-activated cell sorting (MACS) microbeads (Miltenyi Biotec) with 80 µL separation buffer and incubated in the dark at 4°C for 30 min. The cells
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