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21 protocols using fluorescence plate reader

1

Cytotoxicity Assays for HEK293 and HPB-ALL Cells

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HEK293 cells (1 × 104 cells per well) were incubated in 96-well black plates in 100 μL of DMEM medium containing 10% FBS, Streptomycin (100 μg/mL) and Penicillin (100 unit/mL) at 37 °C for 24 h. The medium was exchanged to fresh medium with different concentrations of compound and cells were incubated for 72 h. Fluorometric microculture assay (FMCA) was used for determination of cell proliferation using a fluorescence plate reader (Thermo Fisher Scientific Inc., Waltham, USA).
HPB-ALL cells (1 × 104 cells per well) were incubated in 96-well black plates in 100 μL of RPMI-1640 medium with 10% FBS, Streptomycin (100 μg/mL) and Penicillin (100 unit/mL). Media also contained different concentrations of compound. Cells were incubated at 37 °C for 72 h. After incubation, AlamarBlue (00–025, DAL1025; Thermo Fisher Scientific Inc., Waltham, USA) was added 10 μL per well. After incubation for 4 h, using a fluorescence plate reader (Thermo Fisher Scientific Inc., Waltham, USA), fluorescence was measured and cell viability was determined.
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2

Antiproliferative Potential of GUR Extracts

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The antiproliferative activities of GUR extracts and flavonoids were investigated using the MTT assay [14 (link)]. Firstly, B16-F10 cells were cultured in 96-well plates at approximately 7.5 × 103 cells per well and incubated for 12 h. Then cells were treated with different concentrations of GUR extracts (5, 10, 25, 50, and 100 μg/mL) or GUR flavonoids (10, 20, 40, 60, and 80 μM). After incubation of 48 h, MTT solution (5 mg/mL in PBS) was added to each well, and cells were incubated at 37 °C for 4 h. Subsequently, 150 μL DMSO was added to each well, and the plate was put on a shaker for 5 min, the absorbance were measured at 570 nm using a fluorescence plate reader (Thermo scientific, Waltham, MA, USA). Inhibition percentage (%) was calculated according to the following formula: Inhibition percentage of cell viability (%) = [1−(OD treated well/OD control well)] × 100%. The IC50 value was calculated using the SPSS v. 22.0 Statistics Software (IBM Corp., Armonk, New York, NY, USA).
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3

Cellular ROS Measurement Assay

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Cells (3 × 103/96-well plates) were seeded in medium supplemented with CS-FBS for 24 h in the presence of DEX and/or RU486. Cells were stained with 10 μM DCFH-DA (Beyotime, SH, CHN) in phenol-red free DMEM without serum at 37°C for 20 min, washed with medium, and subjected to fluorescence plate reader (Thermo, NY, USA) (details in Supplementary Table 1).
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4

Fluorescence Analysis of EGCG-Al(III) Chelation and hIAPP Fibrillation

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The chelation of EGCG with Al(III) was studied by fluorescence spectroscopy using QM 40 fluorescence spectrometer (PTI, USA) at 25°C with a 1.0 cm path length quartz cell at the excitation wavelength of 324 nm and emission wavelength from 250 to 375 nm with resolution of 1 nm. Experiments were repeated three times and averaged with standard deviation (mean ± SD).
The fibrillation of hIAPP was monitored by ThT fluorescence using a fluorescence plate reader (ThermoFisher, USA) at 37°C at the excitation wavelength of 450 nm and emission wavelength of 480 nm with 1-minute interval, and the fluorescence intensity of samples was referred to that of corresponding ThT free solutions. Experiments were replicated three times and averaged.
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5

Calpain Activity in Rat Brain Regions

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Cerebellum, cortex and hippocampus were obtained from P8 rats after decapitation. Calpain activity in different brain area was detected. In other part of experiment, cerebellar tissue was collected two h after two-day application of calpain inhibitors. Cytosolic calpain activity was detected following the instruction of kit (K240-100, Biovision, USA). Briefly, reaction mix was added and incubated with the homogenation at 37 °C for 1 h after homogenation. The fluorometric assay is based on the detection of cleavage of calpain substrate Ac-LLY-4-trifluoromethylcoumarin (AFC) (λmax = 400 nm). Upon cleavage of the substrate by calpain, free AFC emits a yellow-green fluorescence (λmax = 505 nm), which could be quantified using a Fluorescence Plate Reader (Thermo Fisher Scientific, USA). RFU/10 mg tissue was calculated.
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6

ORAC Assay for Antioxidant Capacity

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The ORAC assay was carried out according to the method of [30 (link)] using a fluorescence plate reader (Thermo Fisher Scientific, Waltham, Mass., USA). The reaction consisted of 12 μl of diluted aqueous plant extracts and 138ul of fluorescein (14 μM), which was used as a target for free radical attack. The reaction was initiated by the addition of 50 μl AAPH (768 μM) and the fluorescence (emission 538 nm, excitation 485 nm) recorded every 1 min for 2 h in triplicates. Trolox was used as the standard and results expressed as μmol TE/g sample.
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7

Intracellular Nos2 Quantification in Macrophages

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To detect the Nos2 protein in macrophages, an intracellular Nos2 detection assay kit (Abcam) was used following the manufacturer’s protocol. Briefly, cells treated as described above were washed and stained with a staining dye mix from the kit. After incubation at 37 °C for 1 hour, fluorescence signals were measured using a fluorescence plate reader (Thermo Fisher Scientific) at Ex/Em = 485/530 nm, which is proportional to the amount of intracellular Nos2.
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8

ORAC Assay for Antioxidant Activity

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The oxygen radical absorbance capacity (ORAC) assay was conducted using the method of Prior et al.26 (link) on a 96-well microplate using a fluorescence plate reader (Thermo Fisher Scientific, Waltham, Mass., USA). The reaction mixture comprised 12 μL of diluted BGN extract and 138 μL of fluorescein (14 μM), that was used as a target for free radical attack. The reaction was initiated by the addition of 50 μL of 768 μM 2,2′-azobis(2-amidinopropane) dihydrochloride (AAPH) and the fluorescence (emission 538 nm, excitation 485 nm) was recorded every 1 min for 2 h. Trolox was used as the standard and results were expressed as µmol Trolox equivalents (TE)/g. All analysis were carried out in triplicate.
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9

Albumin Flux Measurement in HUVECs

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For albumin flux, measurement was done using established procedures. Briefly, HUVECs were seeded onto tissue culture inserts containing porous membranes (Greiner Thincert 0.4 µm). Once confluent, cells were infected as described above by addition of bacteria or secretomes in the upper compartment. Five micrograms of bovine serum albumin coupled to TRITC (Nordic Immunological) were added together with bacteria or secretomes in the upper compartment. Fluorescence in the lower compartment was measured at 7 hours p.i. in a fluorescence plate reader (ThermoScientific). In case of bacterial infection, bacteria transmigration was examined by plating of serial dilutions of the lower compartment medium on PIA plates and CFU counting. Results shown were calculated for the total volume of the lower compartment.
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10

Measuring Intracellular Labile Iron Pool

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LIP was detected in A549 and H1299 cells based on the calcein-acetoxymethyl ester method. Cells were treated with calcein acetoxymethyl ester (2 µM) (Corning Inc., Corning, NY, USA) at 37 °C for 30 min and were incubated without or with 5 µM deferoxamine for 1 h at 37 °C. The final concentration of 100 µM deferoxamine mesylate is used to remove the iron in calcein. Then, the fluorescence at 485 nm excitation and 535 nm emissions was measured by the fluorescence plate reader (Thermo Fisher). The fluorescence change was used as an indirect measurement of LIP after the addition of deferoxamine. According to the manufacturer’s instructions, intracellular Fe2+ and iron levels were detected using the corresponding detection kits (Sigma-Aldrich).
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