The largest database of trusted experimental protocols

Frap wizard software

Manufactured by Leica
Sourced in Germany

FRAP Wizard software is a tool for analyzing Fluorescence Recovery After Photobleaching (FRAP) data. It provides a step-by-step workflow to process FRAP experimental data and calculate parameters such as mobile fraction and diffusion coefficient.

Automatically generated - may contain errors

7 protocols using frap wizard software

1

FRAP Analysis of DARPP-32 and PKA Dynamics

Check if the same lab product or an alternative is used in the 5 most similar protocols
Cultured striatal neurons were transfected with a plasmid coding for DARPP-32 fused with carboxy terminal of EGFP (2.5 μg per 35-mm diameter dish) or PKA-GFP (2.5 μg) or EGFP (2.5 μg). FRAP and all imaging experiments were carried out at 37 °C at least 24 h later on a confocal SP5 II upright microscope (Leica Microsystems) with a 40X HCX APO (0.80 NA) water objective at the Institut du Fer à Moulin Cell and Tissue Imaging facility. FRAP and photoactivation experiments were performed with the FRAP Wizard software (Leica Microsystems). During acquisition, the temperature of the sample and the objective was maintained at 37 °C in a heated chamber. The pinhole aperture was opened in such a way that the full width at half the maximal intensity was larger than the depth of the cell. Before photobleaching, 30 images were taken at 0.116-s intervals. After photobleaching of a circular region for 500 ms, 500 images were taken at 0.116-s intervals.
+ Open protocol
+ Expand
2

FRAP Imaging and Analysis of Cellular Dynamics

Check if the same lab product or an alternative is used in the 5 most similar protocols
For FRAP experiments, cells were placed in HBSS medium at 32°C on a Leica SP5 II upright microscope (Leica Microsystems). Images were acquired with a 40× HCX APO (0.80 NA) water immersion objective and the FRAP experiment was performed with the FRAP Wizard software from Leica Microsystems. Ten images where taken at low laser intensity (~ 5%) before the bleach for measuring basal fluorescence intensity. Photobleaching was done at 100% of the 488 nm laser line during 500 ms. Recovery was followed with the same laser power as in the pre-bleached session at the same rate of imaging for 40 s. For each time point, the intensity of the bleached area was normalized to the pre-bleached intensity. FRAP recovery curves and analysis where generated using Matlab (Matworks).
+ Open protocol
+ Expand
3

FRAP Imaging and Analysis Protocol

Check if the same lab product or an alternative is used in the 5 most similar protocols
FRAP experiments were conducted by using a 63x oil immersion objective with a NA of 1.4 on a Leica TSC SP5 microscope and the Leica FRAP Wizard software. The pinhole was set to 2 and the argon laser was set to 50% power. Images of 512 ×512 pixels were acquired at a scanning speed of 400 Hz with 25% power of the 488-laser line. Bleaching was achieved by use of the “Zoom In” method and defining rectangular regions of interest directly at the bead surface and by setting all laser lines of the 488 lasers to 100%. Analysis of the images were done with the FRAP Wizard software by subtracting the background and fitting the photo recovery with a single exponential.
+ Open protocol
+ Expand
4

Fluorescence Recovery After Photobleaching

Check if the same lab product or an alternative is used in the 5 most similar protocols
FRAP studies were performed as described previously (26 (link)). Briefly, cells were seeded in eight-well imaging chambers (Ibidi, Martinsried, Germany) and transfected with the plasmid mCherry-Desmoglein1-N-18, a gift from Michael Davidson (Addgene plasmid # 55030; http://n2t.net/addgene:55030; RRID:Addgene_55030) using Turbofect (Thermo Fisher Scientific) according to the manufacturers protocol. 24 h after transfection cells were incubated with respective mediators and IgG fractions for 24 h. FRAP experiments were conducted on an SP5 inverted microscope with a x63 HC PL APO NA=1.2 objective (Leica, Wetzlar, Germany) in a cage incubator (OKOLAB, Burlingame, CA) at 37 °C at constant humidity with 5 % CO2. The FRAP wizard software (Leica) was used to perform and analyze the experiments. Bleaching areas were chosen along the membrane of two transfected neighboring cells. 5 frames were captured to obtain the pre bleach mCherry intensity, followed by bleaching for 10 frames using the 594 nm laser line at 100 % transmission. Recovery of the fluorescence was recorded for 180 s until a stable fluorescence intensity was reached. The fraction of immobile molecules was calculated as
with Iplateau being the plateau fluorescence intensity after recovery and Ibleach being the fluorescence intensity after the bleaching step, both normalized to the initial fluorescence intensity.
+ Open protocol
+ Expand
5

FRAP Analysis of Photobleached Regions

Check if the same lab product or an alternative is used in the 5 most similar protocols
Recovery curves were obtained by measuring the intensities of 18-μm2 background, control and photobleached regions using Leica FRAP Wizard software. FRAP data acquisition and the parameters and equations used for the analysis are listed in the supplementary Materials and Methods and Table S6. GraphPad Prism software was used for nonlinear fitting and plotting of graphs.
+ Open protocol
+ Expand
6

Fluorescence Recovery After Photobleaching of Desmoglein-3

Check if the same lab product or an alternative is used in the 5 most similar protocols
For FRAP experiments wt and Pg-S665A murine keratinocytes were transiently transfected with pEGFP-C1-Dsg3 (kindly provided by Dr. Yasushi Hanakawa, Ehime University School of Medicine, Japan) using Lipofectamine 3000 (Invitrogen, Carlsbad, USA)82 (link),83 . Cells were switched to high Ca2+ (1.2 mM) 24 h after transfection and treated with vehicle or apremilast 48 h after Ca2+ switch for 2 h. FRAP experiments were conducted on an SP5 inverted microscope with a x63 HC PL APO NA = 1.2 objective (Leica, Wetzlar, Germany) in a cage incubator (OKOLAB, Burlingame, CA) at 37 °C at constant humidity with 5 % CO2 using the FRAP wizard software (Leica). Region of Interest (ROI) for bleaching was chosen along the membrane of two transfected adjacent cells. Dsg3 signal of a ROI was bleached using an Argon laser ( λ=488nm ) at 100% transmission and recovery of the fluorescence was recorded for 180 s until a stable fluorescence intensity was reached. Immobile fraction and recovery halftime (τ1/2) was determined to investigate Dsg3 mobility.
+ Open protocol
+ Expand
7

FRAP Analysis of Dsg3 Dynamics

Check if the same lab product or an alternative is used in the 5 most similar protocols
For FRAP experiments, KtyII cells were seeded in eight-well imaging chambers (Ibidi, Martinsried, Germany), transfected with pEGFP-C1-Dsg3 as described before (Ro ¨tzer et al., 2014) and maintained in high Ca 2þ medium for 48 hours. FRAP experiments were performed on a Leica (Wetzlar, Germany) SP5 confocal microscope with a 63Â numeral aperture 1.4 PL APO objective in a constant atmosphere at 37 C with 5% CO 2 using a cage incubator (Okolab, Pozzuoli, Italy) as described elsewhere (Ro ¨tzer et al., 2014) . Briefly, the FRAP Wizard software (Leica) was used to bleach Dsg3-GFP signal at regions of interest along the cell borders of two adjacent transfected cells using the 488-nm line of an argon laser at 100% transmission, and fluorescence recovery was measured in the following 3 minutes. Fluorescence intensities were analyzed and normalized to pre-bleach value in Excel (Microsoft, Redmond, WA), and the immobile fraction was determined using the FRAP Wizard.
+ Open protocol
+ Expand

About PubCompare

Our mission is to provide scientists with the largest repository of trustworthy protocols and intelligent analytical tools, thereby offering them extensive information to design robust protocols aimed at minimizing the risk of failures.

We believe that the most crucial aspect is to grant scientists access to a wide range of reliable sources and new useful tools that surpass human capabilities.

However, we trust in allowing scientists to determine how to construct their own protocols based on this information, as they are the experts in their field.

Ready to get started?

Sign up for free.
Registration takes 20 seconds.
Available from any computer
No download required

Sign up now

Revolutionizing how scientists
search and build protocols!