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2 protocols using tris hci

1

DNA Extraction Protocol using Diatomaceous Earth

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Hyflo Super Cel (Diatomaceous earth), 3-aminopropyl(diethoxy)methylsilane (APDMS, 97%), dimethyl suberimidate dihydrochloride (DMS, 98%), lysozyme solution (50 mg/mL in distilled water), sodium hydroxide solution (50% in H2O), N-Acetyl-L-cysteine (NALC, 99%), sodium citrate, and Triton X-100 were purchased from Sigma-Aldrich (St. Louis, MO, USA). Tris-HCI (pH 8.0), distilled water (DNase/RNase-Free), and EDTA (pH 8.0) were purchased from Invitrogen (Waltham, MA, USA). Proteinase K solution (>600 mAU/mL) was purchased from Qiagen (Hilden, Germany). Absolute ethanol was purchased from Merck (Whitehouse Station, NJ, USA). Phosphate-buffered saline (PBS; 10×, pH 7.4) was purchased from Gibco (Grand Island, NY, USA).
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2

Magnetic Bead-based Oligonucleotide Capture

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Triton X-100 (Sigma-Aldrich), Tris-HCI (1
M, pH 8.0, Invitrogen), EDTA (0.5 M, pH 8.0, Invitrogen), lysozyme
from chicken egg white (Sigma-Aldrich), streptavidin conjugated magnetic
beads (1 μm, OceanNanoTech), sodium chloride (Sigma-Aldrich),
20× SSC (IBI Scientific), sodium dodecyl sulfate solution (10%,
Sigma-Aldrich), UltraPure distilled water (Invitrogen), bovine serum
albumin (>98%, Sigma-Aldrich), 1× phosphate buffered saline
(Sigma-Aldrich),
Biotinylated single-stranded oligonucleotides with C12 linker between
biotin and oligonucleotides (Eton Bioscience).
EC1:5′-biotin-C12-CTGCGGGTAACGTCAATGAGCAAA-3′
EC2:5′-GGTATTAACTTTACTCCCTTCCTC-C12-biotin-3′.
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