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5 protocols using evos cell imaging systems microscope

1

Angiogenic Tube Formation Assay

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Serum-reduced Matrigel (10 mg/ml; BD Biosciences) was thawed overnight at 4 °C, and 150 μl was added to each well of a 48-well microtiter plate and allowed to solidify for 1 h at 37 °C. The wells were incubated with 3.25 × 104 TIME cells plus 500 ng/ml rhAng1 either alone or with 1 μM of Ang2-BDWT, Ang2-BDBC5, Ang2-BDBC6, Ang2-BDBC10, or cRGD peptide (Merck Millipore). The cells were incubated for 16–18 h at 37 °C/5% CO2 and then washed twice in HBSS (Hanks’ balanced salt solution; Sigma). Capillary tube formation was observed using EVOS Cell Imaging Systems microscope (ThermoFisher Scientific). Images were collected with an EVOS × 2 Objective. The total number of meshes and the number of junctions of the tubes were quantified by the analysis of digitized images of the capillary-like structures using ImageJ software and the Angiogenesis Analyzer plugin.
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2

Immunofluorescence Staining of Alzheimer's Markers

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Published clinical cohort studies were used to select AD markers for pre-clinical immunofluorescence staining of brain sections [31 (link),32 (link)]. Briefly, brain sections were stained with the following diluted primary rabbit polyclonal antibodies against beta-amyloid precursor protein (CT695), phospho-Tau/Thr231 (PA5– 117230), and RAGE (PA5–78736) (dilution at 1:200, ThermoFisher). Then secondary antibody Goat anti-Rabbit IgG H&L (Alexa Fluo ® 594) (Abcam, UK, ab150080) was used. To label nuclei, the slices were incubated with Hoechst 33342 (1:2000, ImmunoChemistry Technologies) and then mounted in Aqua Poly/Mount (Polysciences, Inc.). Images were acquired using EVOS Cell Imaging Systems microscope (Thermo Fisher Scientific) and evaluated by Image J.
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3

Ang2 Isoform Effects on Tube Formation

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Serum-reduced Matrigel (10 mg/ml; BD Biosciences) was thawed overnight at 4°C, and 150 μl were added to each well of a 48-well microtiter plate and allowed to solidify for 1 h at 37°C. Wells were incubated with 3.25 × 104 TIME cells with 2 μM, 4 μM and 8 μM of Ang2-BDWT and Ang2-BDC2.36; rhAng1, 200 ng/ml, was added as the positive control. Cells were incubated for 16–18 h at 37°C/5% CO2. Cells were then washed twice in HBSS (Hanks’ balanced salt solution, Sigma), and capillary tube formation was observed using EVOS Cell Imaging Systems microscope (Thermo Fisher Scientific). Images were taken with EVOS 2× Objective, phase-contrast. Total length and number of junctions of the tubes were quantified by analysis of digitized images using ImageJ software and the Angiogenesis Analyzer plugin of the capillary-like structures. Tube formation assay data was analyzed with GraphPad Prism version 5.00 for Windows (La Jolla, CA, USA). Data shown is the average of triplicate experiments, and error bars represent standard error of the mean. Statistical significance was determined by column statistics and t test analysis. P value < 0.05 was considered statistically significant.
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4

Immunostaining for Oxidative Stress Markers

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For immunostaining, cells were first fixed in 4% PFA for 15 minutes. Following fixation, cells were washed with PBS, permeabilized with PBS with 0.1% Triton X-100 for nuclear staining and blocked in PBS with 2% BSA at room temperature for 30 minutes. Cells were then incubated with the indicated primary antibodies: phospho-yH2AX (1:100, Cell Signaling, # 9718), NOX2 (1:100, Thermo Fisher Scientific, PA5-79118) , NOX4 (1:100, R&D systems, MAB8158), and CYBA/P22 (1:100, Thermo Fisher Scientific, PA5-71642) overnight at 4°C. Cells were washed with PBS, and incubated with species-appropriate goat/donkey secondary antibodies coupled to AlexaFluor dye 568 (Invitrogen) and Hoechst dye for nuclear staining for 2 hrs at RT. Stained cells were imaged using EVOS Cell Imaging systems microscope (Thermo Fisher Scientific), and quantification was performed using Image J. For quantitation, phospho-yH2AX+ and Hoechst+ cells were counted in at least 5 images per condition, and data is represented as mean ± SD in the graphs.
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5

Fetal Intestinal Organoid Culture

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Fetal organoids were cultured according to a protocol by (Fordham et al., 2013) . During organoid culture, the media was replaced every 48-72 hours. For full media composition, see supplementary table 3. Organoids were passaged using mechanical disruption with a P1000 pipette and re-seeding in fresh growth-factor reduced Matrigel® (Corning). Processing for single-cell sequencing analysis was performed by removing the organoids from Matrigel using incubation with Cell Recovery Solution at 4 o C for 30 minutes, pelleting the cells, and resuspending in TrypLE enzyme solution (Thermo Fisher) for incubation at 37 o C for 15 mins. Cells were pelleted again and re-suspended in DMEM/F12. Cells from fetal ileum from embryos of 6 PCW were dissociated into single-cell suspension at passage 1 (~1 week) or passage 17 (~1 month) in culture and profiled using 10x Genomics single-cell transcriptomics. Brightfield images of organoids were taken using an EVOS Cell Imaging Systems microscope (Thermo Fisher).
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