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Geneglobe program

Manufactured by Qiagen
Sourced in United States

The GeneGlobe program is a web-based platform that provides access to a comprehensive portfolio of pre-designed and validated assays for gene expression analysis. The core function of the GeneGlobe program is to enable researchers to easily browse, select, and order the specific assays they need for their research projects.

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2 protocols using geneglobe program

1

Identifying Optimal Normalization Genes

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Five genes were included as endogenous controls in the PCR array: gapdh (glyceraldehyde 3-phosphate dehydrogenase), gusb (β-glucuronidase), b2m (β-2-microglobulin), actb (β-actin), and Hsp90ab1 (β-heat shock 90kD protein 1). The data were analyzed with the GeneGlobe program provided by Qiagen. This method automatically selects an optimal set of internal control/housekeeping/normalization genes for analysis, from the available housekeeping gene panel on the PCR array. The software measures and identifies the genes with the most stable expression via a nonnormalized calculation. b2m was selected as an optimal internal control with this program. Relative expression was calculated using the 2−ΔΔCt method,20 (link),21 (link) normalized to b2m.
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2

Screening Angiogenic and Notch Signaling Genes

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To screen for angiogenic markers, we used RT2 Profiler™ PCR Array Human Angiogenesis (Cat#: PAHS-024Z, Qiagen, Germantown, MD, USA) and RT2 Profiler™ PCR Array Human Notch Signaling Pathway Plus (Cat#: PAHS-059Y). Each array contains 86 genes, 5 housekeeping genes, human genomic DNA contamination, reverse transcription, and positive PCR controls. Total RNA from HUVECs (control and treated) was extracted using an RNA extraction kit (Qiagen). A total of 0.5 µg of mRNA was used for cDNA synthesis using the RT2 First Strand Kit (Cat# 330401, Qiagen). cDNA was then mixed with 2 × RT2 SYBR Green qPCR Master Mix and RNase- and DNase-free water and loaded onto the plates following the manufacturer’s instructions. RT-PCR was performed with a CFX96 thermocycler (Bio-Rad, Hercules, CA, USA) All the samples passed the quality control checks using the GeneGlobe Program provided by Qiagen (https://geneglobe.qiagen.com/us/analyze, accessed on 30 January 2023). RT2 PCR array data were normalized against the housekeeping genes (GAPDH, ACTB, B2M, RPLP0, and HPRT1) by calculating the 2−∆∆CT for each gene of interest in the plate. Heatmaps were generated and analyzed by using GeneGlobe Program. Finally, the candidate genes were chosen to be validated in an additional qRT-PCR experiment.
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