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12 protocols using col2a1

1

Western Blot Analysis of Cellular Proteins

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The total protein of cells was extracted using RIPA buffer (Solarbio Biotech, Beijing, China). Protein concentrations were examined using BCATM protein assay kit (Beyotime Biotechnology, Shanghai, China). A total of 30ug protein was loaded onto the PAGE (EpiZyme, Shanghai, China), separated by electrophoresis and then transferred onto PVDF membranes (Immunoblot, Bio-Rad). The membranes were blocked with 5% non-fat milk (Difco™ Skim Milk, BD) for 1 h at room temperature and incubated with primary antibodies against COL2A1 (Proteintech, Wuhan, China), MMP13(Santa Cruz, UK), BAX(CST, USA), HOXA3(Santa Cruz, USA), GAPDH(CST, USA) at 4 °C overnight. Next, the membranes were incubated with secondary antibodies(Santa Cruz, USA) for 1 h at room temperature. The protein signaling were visualized with ECL chemiluminescence kit(Santa Cruz Biotechnology, Dallas, TX, USA) using Molecular Imager ChemiDoc XRS System(Bio-Rad).
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2

Protein Isolation and Western Blot Analysis

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RIPA lysis buffer (Beyotime Biotechnology) was used to isolate total protein from the cells with different treatments, and the protein concentrations were determined using a BCA assay kit (Thermo Fisher Scientific). Protein samples (20 μg) were separated by 10% SDS-PAGE, transferred to polyvinylidene fluoride membranes, and blocked with 5% skim milk at 37 °C for 2 h. After washing thrice with PBST (PBS with 1% Tween-20), the membranes were incubated with primary antibodies against c-Myc (1:1000, CST), ALP (1:500, Abcam), OCN (1:1000, NOVUS), RUNX2 (1:1000, Abcam), OPN (1:600, Abcam), Akt (1:1000, CST), p-Akt (1:2000, CST), PI3K (1:2000, Proteintech), COL1A1 (1:1000, NOVUS), COL2A1 (1:1000, Proteintech), p53 (1:1000, Proteintech), and GAPDH (1:1000, Proteintech) at 4 °C overnight. After washing, the membranes were then incubated with the secondary antibody (1: 1000, Jackson ImmunoResearch Laboratories, Inc.) at 37 °C for 2 h. After washing, the protein bands were visualized using ECL system.
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3

Western Blot Analysis of Chondrocyte Markers

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SMSCs were collected on ice with PBS and the Western blot analysis was performed as previously described [21 ]. All proteins were collected by using lysis buffer and the sample/handled protein (30 μg) was added to SDS-PAGE and shifted on PVDF membranes (Beijing Liuyi Biotechnology, China). Membranes were then incubated with the antibodies against SRY-Box 9 (SOX9; cat.67439-1-Ig, Proteintech), aggrecan (ACAN; cat.13880-1-AP, Proteintech), type II collagen (COL2A1; cat.28459-1-AP, Proteintech), MMP3 (cat.66338-1-Ig, Proteintech), MMP13 (cat.18165-1-AP, Proteintech), GATA3 (cat.66400-1-Ig, Proteintech), and tubulin (cat. 10094-1-AP, Proteintech) at 4 °C overnight; all antibodies were diluted using 1:1000 ratio. Then, the membranes were incubated with secondary antibodies and cultured again for 1 h at 25 °C. The film was placed in super ECL plus hypersensitive luminous solution for 2 min, after which the densitometry was graphed using image J (Version 1.8,0, USA).
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4

Histological Staining and Immunoanalysis

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Histological staining analyses were performed according to manufacturer's instructions. HE staining kit (G1003; Servicebio) was used for HE staining, Saffron Fast Green dye solution kit (G1053; Servicebio) for Safranin fast green staining, and Masson staining solution (G1006; Servicebio) for Masson staining.
Immunofluorescence (IF) and immunohistochemistry (IHC) analyses were conducted according with protocols.[1] Primary antibodies for IHC included: NOTCH3 (bioss‐1812R, 1:200), α‐SMA (Proteintech, No.14395‐1‐AP, 1:3000), COL1A1 (Proteintech, No.67288‐Ig, 1:2500), COL2A1 (Proteintech, No.28459‐1‐AP, 1:800), PLVAP (bioss‐12737R, 1:50), and HEYL (Proteintech, 15679‐1‐AP, 1:200). Primary antibody for IF included fast myosin (GB112130, red light, 1:1000), slow myosin (GB112131, green light, 1:1000), NOTCH3 (bioss‐1812R, 1:200),HEYL (Proteintech, 15679‐1‐AP, 1:200), and MYOCD (bioss‐9472R, 1:200). Section area and positive area quantifications were conducted using Image J software.
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5

Cartilage Degeneration Assessment and Protein Expression

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Human knee articular samples and rat knee joints were prepared and fixed in 4% paraformaldehyde. Then, the samples were decalcified in 10% EDTA for 21 days and embedded in paraffin. Tissue sections (5 μm) were stained with safranin O/fast green following standard protocols to determine cartilage degradation under light microscopic examination. The Osteoarthritis Research Society International (OARSI) scoring system was used to assess joint cartilage degeneration [26 (link)]. Because both the tibial and femoral cartilages were assessed in the present study, the maximum OARSI score was 48. Three independent investigators who were blinded to the experimental groups performed the scoring. Immunohistochemistry was further performed to analyze the protein expression of KLF2, MMP13, and COL2A1 in histological sections of human knee articular samples and rat knee joints. Primary antibodies against KLF2 (Abcam), MMP13, and COL2A1 (Proteintech) were used at 1 : 100-1 : 200 dilutions and incubated overnight at 4°C. Then, the sections were incubated with a biotinylated secondary antibody. The reaction was developed using a DAB kit (BD Bioscience, Franklin Lakes, NJ, USA). The expression of KLF2 and MMP13 was evaluated by calculating the percentage of immunopositive cells. The expression of COL2A1 was evaluated by calculating the relative intensity.
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6

Protein Expression Analysis in hADSCs

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Total protein separated from hADSCs using a protein extraction kit (Bio-Rad, USA), and the concentration of total protein was determined using BCA kit (Tianjin, China). Subsequently, the protein (50 μg) was separated by SDS-PAGE. Then, moved to PVDF (Millipo,USA), the membrane was incubated with blocking buffer at room temperature for 1 h. Then, incubate the first antibody GAPDH (Abcam), Aggrecan (Proteintech), SOX9 (Proteintech), COL2A1 (Proteintech), BMPR2 (Abcam) overnight, followed by secondary antibody at room temperature for 1 h. The GAPDH was used internal control. All western blot experiments were repeated at least three times.
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7

Western Blot Analysis of Chondrocyte Markers

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The cells were lysed in radio immunoprecipitation assay (RIPA) buffer (Heart, Xi’an, China) with protease inhibitor and phosphatase inhibitor. Total protein concentrations of cell lysates were determined using the bicinchoninic acid (BCA) protein assay (Heart). A total of 30 μg protein was separated by 10% SDS-PAGE (sodium dodecyl sulfate-polyacrylamide gel electrophoresis) and transferred to polyvinylidene difluoride (PVDF) membranes (Millipore, Bedford, MA). Then membranes were blocked at room temperature for 2 hours in Tris-buffered saline with 0.5% Tween20 and 10% nonfat dry milk and incubated overnight at 4 °C with primary antibodies, anti-mouse MMP-10 (1:800; Abcam), Col X (1:1,000; Abcam), Col2a1 (1:1,000; Proteintech, Wuhan, China), Runx2 (1:1,000; Abcam), MMP-13 (1:1,000; Abcam), and GAPDH (1:2,000; BOSTER, Wuhan, China) antibodies separately. After washing with TBS-T, the membranes were incubated for 1 hour with the appropriate secondary antibody. Immunoreactivity was visualized using the ECL system (Amersham Biosciences, Piscataway, NJ). Signals were quantified using Image J software.
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8

Immunohistochemical and Immunofluorescence Analysis

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Samples were incubated with 3% H2O2 for 10 min at 25°C to block endogenous peroxidase activity. After blocking with normal goat serum, primary antibodies against TNC (1:100; Proteintech, Wuhan, China), ITGB1 (1:100; Proteintech, Wuhan, China), COL2A1 (1:100; Proteintech, Wuhan, China), COL1A1 (1:100; Proteintech, Wuhan, China), p-SMAD2/3 (1:100; Cell Signaling, USA) and SMAD2/3 (1:100; Cell Signaling, USA) were added and incubated overnight at 4°C. For the immunohistochemical staining, a secondary antibody was incubated for 1 h, and then used DAB kit (ZSGB-BIO, Beijing, China) for development. After being stained with hematoxylin, the sections were sealed and photographed by a microscope. For the immunofluorescence staining, fluorescent dye-conjugated secondary antibodies FITC and CY3 (1:100; Bioss, Beijing, China) and 4′, 6-diamidino-2-phenylindole (DAPI; Beyotime Biotechnology, Shanghai, China) were used for binding and nuclear staining. Images were collected with a fluorescence microscope (ECHO, USA) and fluorescence intensity was semi-quantitatively analyzed by Image J.
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9

Quantifying Cartilage Biomarkers via IHC

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Slices of the joint were prepared in the sagittal plane, with each slice measuring 4 µm in thickness for immunohistochemical analysis. Tissue expression of matrix metalloproteinases-13 (MMP-13, 1:100; proteintech, 18,165–1-AP) and collagen type II alpha 1 (COL2A1, 1:100; proteintech, 28,459–1-AP) was assessed through immunohistochemistry. The computer image analysis technique (Image-Pro Plus) was employed to analyze the percentage of positively stained cells in all the cartilage slices.
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10

Western Blot Analysis of Inflammatory Markers

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Cell lysates or milled tissues were treated with RIPA lysis buffer (Beyotime, China), and proteins were extracted. The proteins were separated by polyacrylamide gel electrophoresis (SDS-PAGE) and then transferred onto PVDF membranes. The membranes were blocked with 5% skim milk. The primary antibodies used were GSDMD (Proteintech, 1 : 5000), GSDMD-N (CST, 1 : 1000), caspase-1 (Proteintech, 1 : 1000), NLRP3 (Abcam, 1 : 1000), LC-3 (CST, 1 : 1000), Beclin-1 (Boster,1 : 1000), P62 (Boster, 1 : 1000), COL2A1 (Proteintech, 1 : 6000), MMP3 (Proteintech, 1 : 4000), and GAPDH (Abcam, 1 : 10000). After incubation with horseradish peroxidase-conjugated secondary antibodies (Boster, China) and washed with Tris-buffered saline tween (TBST) buffer, the bands were visualized and detected using the enhanced chemiluminescence system. The band intensity value of proteins was calculated using ImageJ 1.52a (National Institutes of Health, USA) and normalized to GAPDH.
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