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6 protocols using amersham hybond p 0.45 pvdf

1

Extracting and Analyzing PANK2 Protein

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Twenty embryos for each condition were manually dechorionated. Proteins were extracted by homogenizing embryos in buffer (200 mM Tris/HCl, 100 mM NaCl, 1 mM EDTA, 0.5% NP-40, 10% Glycerol, 1 mM NaFl and sodium orthovanadate) on ice and quantified by a standard bicinchoninic acid method. A total of 50 μg of total protein extract were then separated on 10% polyacrylamide gels and transferred onto membranes (GE AmershamTM HybondTM P 0.45 PVDF). Membranes were cut at the level of the molecular weight of interest, blocked with 2% skim milk in TBST, and incubated with the primary antibody diluted in 2% skim milk in TBST (Abcam ab128298 polyclonal rabbit anti-PANK2 antibody, 1:1000, Origene TA890010 monoclonal mouse anti-actin antibody, 1:1000) and then with the appropriate secondary antibody also prepared in 2% skim milk (1:2000, from Pierce). Images were acquired with Li-Cor Odyssey Image station, and band intensity was quantified by ImageJ software without any modification of the original data. Original images were partially cropped to fit the final figure.
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2

Immunoblotting of Drosophila Brain Lysates

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Lysates from wild-type or per01 larval brains were sonicated in 2x Laemmli, separated by SDS-PAGE and transferred to PVDF membranes (AmershamTM HybondTM P 0.45 PVDF, GE Healthcare Life science, Chicago, IL, United States). Blots were incubated overnight at 4°C with the following antibodies: rabbit anti-phospho-Akt (Ser473) (1:1000; clone D9E, Cell Signaling, Danvers, MA, United States), rabbit anti-Akt (1:1000, Cell Signaling), rabbit anti-phospho-Drosophila-p70 S6k (1:1000; Cell Signaling), mouse anti-α-Tubulin (1:5000, clone NDM1A, Merck, Darmstadt, Germany). After incubation with HRP-coupled secondary antibodies, signal detection was done with the ECL Plus detection reagents (GE Healthcare Life Science, Buckinghamshire, United Kingdom) and a ChemoCam ECL Imager equipped with a 16 bit camera (Intas, Göttingen, Germany). Exposure times were adjusted to allow for quantification of signal intensities within the dynamic range of the camera system.
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3

TREM2 and Amyloid-beta Western Blot

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Western blot analysis of membrane‐bound TREM2 was performed as previously described (Kleinberger et al, 2014). For Western blot analysis of Aβ, lysates were prepared with 8 M urea lysis buffer (8 M Urea, 50 mM Tris–HCL pH 7.4) freshly supplemented with a protease inhibitor cocktail (Sigma‐Aldrich) and incubated on ice for 30 min. The lysate was mixed with Laemmli sample buffer supplemented with beta mercaptoethanol, and equal amounts of protein were separated by SDS–PAGE. After transfer onto polyvinylidene difluoride membranes (Amersham Hybond P 0.45 PVDF, GE Healthcare Life Science) or nitrocellulose membranes (GE Healthcare Life Science), blots were blocked for 1 h with I‐Block (Thermo Fisher Scientific) and exposed to 5F4 for TREM2 and sTREM2 or 2D8 (Shirotani et al, 2007) for Aβ. Signals were visualized with HRP‐conjugated secondary antibodies using ECL kit (Thermo Fisher Scientific).
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4

Western Blot Analysis of Pancreatic Cell Proteins

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αTC1-6 and NIT-1 cells were lysed in ProteoJET™, a mammalian cell lysis Reagent (Fermentas, Life science) supplemented with a protease inhibitor cocktail for 30 min at 4°C. Equal amounts of cell lysates were separated by 9% (for Arx analysis)-15% (for Insulin and Glucagon analysis) sodium dodecyl sulfate polyacrylamide gel electrophoresis and transferred onto polyvinylidene difluoride membranes (Amersham Hybond P 0.45 PVDF, GE Healthcare Life Sciences). Immunoblotting was performed overnight by incubation at 4°C with the primary antibody, followed by incubation with the appropriate horseradish peroxidase-conjugated secondary antibody at room temperature for 60 min. All used antibodies and their dilutions are listed in Table 6 (Supplementary Material). Detection was performed by the enhanced chemiluminescence detection system according to the manufacturer’s instructions (Amersham Pharmacia Biotech, Amersham, UK). The intensities of the signals were quantified using TotalLab electrophoresis software, ver. 1.10 (Phoretix, Newcastle upon Tyne, UK).
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5

Detecting Membrane-Bound TREM2 Protein

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To detect membrane bound Trem2, membrane fractions were collected as previously described [32 ]. Briefly, cells were lysed in hypotonic buffer (100 mM Tris-HCl, pH 7.4, 1 mM EDTA, 1 mM EGTA, pH 7.4) freshly supplemented with a protease inhibitors cocktail (Sigma-Aldrich). Membrane fractions were pelleted by centrifugation for 45 min at 16,000 g at 4 °C. Membranes were lysed in STEN lysis buffer (150 mM NaCl, 50 mM Tris-HCl, pH 7.6, 2 mM EDTA, 1% Triton-X 100) on ice for 20 min. Equal amounts of protein were mixed with Laemmli sample buffer supplemented with β mercaptoethanol followed by by SDS-PAGE. Proteins were transferred onto polyvinylidene difluoride membranes (Amersham Hybond P 0.45 PVDF, GE Healthcare Life Science) and blocked in 10% I-BlockTM (Thermo Fisher Scientific) for 1 h. Monoclonal antibody 5F4 (dilution 1:100) [32 ] was used to detect Trem2.
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6

Western Blot Analysis of Signaling Proteins

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Cells were lysed in 1× sodium dodecyl sulfate (SDS) sample buffer. Cell lysates were quantified for protein concentrations with a BCA protein assay kit (Thermo Fisher Scientific). Following the addition of 2-mercaptoethanol, the samples were boiled, and 15–20 μg of the cell lysates were separated by SDS polyacrylamide gel electrophoresis and transferred onto polyvinylidene fluoride (PVDF) membranes (Amersham Hybond P 0.45 PVDF; GE Healthcare, Little Chalfont, UK). Target proteins were detected using specific antibodies at appropriate dilutions (GAPDH, 1:1000; CD200, 1:1000; CD200R1 1:1000; ERK1/2 1:1000; pERK1/2 1:1000; AKT 1:1000; pAKT 1:2000), at 4°C overnight. Blots were then incubated with a secondary goat anti-rabbit (NA9340 V; GE Healthcare, Buckinghamshire, UK) or anti-mouse antibody (NA9310 V; GE Healthcare) at room temperature for 1 h. Blots were visualized by enhanced chemiluminescence detection using Pierce ECL Western Blotting Substrate Plus (Thermo Fisher Scientific).
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