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16 protocols using d3922

1

BODIPY 493/503 staining of HUVECs

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HUVECs were stained with 2 μM boron-dipyrromethene (BODIPY) 493/50317 (link) (D3922; Thermo Fisher) for 15 min. Then, cells were washed with PBS and analysed by flow cytometry.
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2

Quantitative Analysis of Kidney Lipid Content

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OCT-embedded kidney tissues were sectioned at 12 μm for oil red O (Sigma-Aldrich, US) and 3 μm for bodipy (D3922, Thermo Fisher, US) staining as previously described [6 (link), 21 (link), 25 (link)]. Nuclei were viewed by alum haematoxylin staining. After bodipy staining, slides were immunostained with laminin (L9393, Sigma-Aldrich) and DAPI to visualize the tubule and cell nuclei, respectively. The positive area (%) for each section was analyzed using Image-Pro Plus 6.0 software. At least ten randomly chosen fields were evaluated for each sample, and an average score was calculated.
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3

Lipid Droplet Quantification in Cultured Cells

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Cells were cultured in 96-well plates (10386612, Fisher Scientific). On day 12 of differentiation, cells were fixed in PBS with 4% paraformaldehyde (SC281692, Santa Cruz Biotechnology) for 10 min and washed with PBS. LDs and nuclei were stained with BODIPY 493/503 (1:2,500 dilution, D3922, Thermo Fisher Scientific) and Hoechst (1:5,000 dilution, ABCAAB228551, VWR) for 10 min. Scanning was performed using CellInsight CX5 (Thermo Fisher Scientific) and quantified by employing object (nuclei) and spot (LD) detection algorithm in HCS Studio software (Thermo Fisher Scientific). LD area and number were normalized to nuclei count.
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4

Visualizing Lipid Droplet Accumulation in MCF10C1a Cells

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To visualize the effect of 1,25(OH)2D on neutral lipid accumulation, MCF10C1a cells were plated onto 8 well Permanox® chamber slides (Sigma-Aldrich, ST. Louis, MO) and treated for 5 days with either vehicle or 1,25(OH)2D. After 5 days of treatment, cells were fixed using 10% neutral buffered formalin for 15 minutes at room temperature. Neutral lipid droplets were next stained with BODIPY® 493/503 (4,4-Difluoro-1,3,5,7,8-Pentamethyl-4-Bora-3a,4a-Diaza-s-Indacene), a fluorescent dye with specificity for neutral lipids (D-3922, ThermoFisher Scientific, Waltham, MA) at a concentration of 10µg/ml in PBS containing 1 % BSA, 0.1 % saponin, and 0.02 % Sodium azide for one hour. A DNA stain was further applied as a nuclear counterstain (DAPI (4′,6-diamidino-2-phenylindole), D21490, ThermoFisher Scientific, Waltham, MA). Imaging was performed using an A1 RMP multiphoton confocal microscope and then analyzed using FIJI, an ImageJ based image processing software available under the General Public License (fiji.asc). For quantification, cell images were taken 1µm apart across the whole cell and stacked onto one image. BODIPY signal per each stacked image was then quantified using FIJI and normalized to the number of stained nuclei in each image.
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5

Visualizing Lipid Droplets in Kidney Tissue

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Lipid droplets were viewed by BODIPY or oil red O staining. Briefly, freshly prepared kidney tissues were OCT-embedded and sectioned at 3 μm for BODIPY (D3922, Thermofisher Scientific) staining, which was diluted in DMSO at a concentration of 1 mg/ml according to the manufacturer’s instructions. After stained with BODIPY, slides were immunostained with laminin (ab11575, Abcam) and DAPI. Oil Red O was performed according to the manufacturer’s protocol (O0625, Sigma Aldrich) on 9-μm thickness sections of fixed or frozen kidney tissue and cells cultured on coverslips. The kidney sections and cells were rinsed in distilled water and isopropanol, and stained for 15 min in the Oil Red O working solution at room temperature, then rinsed again for 1 min in 60% vol./vol. isopropanol and returned to distilled water. The slides were counterstained with hematoxylin for 1 min. The percentage of positive area to the selected field was analyzed using Image Pro Plus 6.0 software. An average positive area for each section was calculated. At least ten randomly chosen fields under the microscope were evaluated for each sample, and an average score was calculated.
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6

Lipid Content Quantification in BM Cells

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BM cells washed in PBS were incubated 30 min at 37°C in IMDM containing 1 μM fluorescent neutral lipid dye BODIPY 493/503 (4,4-difluoro-1,3,5,7,8-pentamethyl-4-bora-3a,4a-diaza-s-indacene; D3922, Thermo Fisher Scientific). Cells were then washed in PBS and stained for cell surface markers (panel P15, table S7) as described above.
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7

Quantifying Lipid Droplets in Cardiomyocytes

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Cells were stained with LipidTOX kit or BODIPY staining following the manufacturer’s protocol (Thermo Fisher #H34475 or #D3922, respectively). Briefly, after indicated treatment, NRVCs grown on coverslips were fixed in 4% paraformaldehyde at room temperature for 10 min and subjected to LipidTOX labeling (1: 1000 in PBS, RT for 30 min) or BODIPY labeling (1: 5000 in PBS, RT for 30 min). The cells were counterstained with cardiac Troponin-T (TnT)/Phalloidin (Thermo Fisher) and DAPI (diamidino-2-phenylindole, Thermo Fisher) to label cardiomyocytes and nuclei, respectively. Confocal images were quantified by ImageJ. LipidTOX/BODIPY intensity was normalized with DAPI intensity. Eight views/sample, 3 samples/group were quantified.
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8

Quantifying Lipid Droplets in Cardiomyocytes

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Cells were stained with LipidTOX kit or BODIPY staining following the manufacturer’s protocol (Thermo Fisher #H34475 or #D3922, respectively). Briefly, after indicated treatment, NRVCs grown on coverslips were fixed in 4% paraformaldehyde at room temperature for 10 min and subjected to LipidTOX labeling (1: 1000 in PBS, RT for 30 min) or BODIPY labeling (1: 5000 in PBS, RT for 30 min). The cells were counterstained with cardiac Troponin-T (TnT)/Phalloidin (Thermo Fisher) and DAPI (diamidino-2-phenylindole, Thermo Fisher) to label cardiomyocytes and nuclei, respectively. Confocal images were quantified by ImageJ. LipidTOX/BODIPY intensity was normalized with DAPI intensity. Eight views/sample, 3 samples/group were quantified.
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9

Whole-Mount Adipose Tissue Imaging

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For whole-mount fluorescence microscopy of adipose tissue, fascia was carefully removed from inguinal fat pads under a dissecting microscope and the tissue was then fixed for 1 h at room temperature with 1% paraformaldehyde in PBS and permeabilized for 1 h with 0.3% Triton X-100 in PBS (PBST) before incubation for 30 min at room temperature with Hoechst 33342 (H3570, Invitrogen) at a dilution of 1:1,000 and boron dipyrromethene (BODIPY; D3822, Invitrogen) at a dilution of 1:2,000 in PBST. The tissue was washed several times with PBST, mounted in fluorescence mounting medium (S3023, Dako) and imaged with a confocal microscope (LSM880, Carl Zeiss). For Oil Red O staining of lipid droplets, cells were fixed with 4% formaldehyde, stained with Oil Red O solution (O1516, Sigma) for 20 min, and washed with PBS. Fluorescence imaging of cells was performed after staining with Hoechst 33342 (ab228551, Abcam) and BODIPY 493/503 (D3922, Thermo Fisher Scientific). Lipid droplet accumulation was assessed at 6 days after application of the adipogenic cocktail to induce adipocyte differentiation. The cells were imaged using a CQ1 microscope (Yokogawa).
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10

Lipid Droplet Quantification in Microglia and BV2 Cells

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To detect lipid droplet formation, iMGs were immunostained with IBA1, incubated in PBS with BODIPY 493/503 (4,4-difluoro-1,3,5,7,8-pentamethyl-4-bora-3a,4a-diaza-s-indacene) (1:1,000 from a 1 mg/mL stock solution in DMSO; D3922, Thermo Fisher Scientific) as a lipid droplet marker for 10 min at RT, washed three times in PBS, and counterstained with DAPI. The percentage of lipid-droplet-containing iMGs was determined by calculating the rate of BODIPY+ IBA1+ cells after counting the total number of IBA1+ cells and IBA1+ cells with BODIPY+ lipid droplets. In addition, BODIPY+ fluorescence intensity per cell was analyzed using ImageJ software to determine the relative concentration of lipid droplets.
Following specific treatments, BV2 cells were fixed in 4% PFA for 30 min, washed three times in PBS, and incubated in PBS with BODIPY 493/503 (1:1000) for 10 min at RT. Cells were then washed with PBS three times and counterstained with DAPI. Percentages of lipid-droplet-containing BV2 cells in total cells and BODIPY+ cells were analyzed using ImageJ software. The average size of lipid droplets in the BODIPY+ signal was analyzed using the ‘analyze particles’ function of ImageJ software.
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