The largest database of trusted experimental protocols

Analyst software v 1.6.2

Manufactured by AB Sciex
Sourced in Canada

The Analyst software (V.1.6.2) is a data acquisition and analysis software designed for use with AB Sciex mass spectrometry instruments. The software's core function is to control the instrument, acquire data, and provide tools for data processing and analysis.

Automatically generated - may contain errors

5 protocols using analyst software v 1.6.2

1

Targeted Metabolite Profiling by LC-MS/MS

Check if the same lab product or an alternative is used in the 5 most similar protocols
A Dionex Ultimate 3000 HPLC system was used (Thermo Scientific) coupled to an API 4000 Qtrap LC–MS/MS (AB Sciex, Toronto, Canada) equipped with a TurboV Ion Spray source operating in positive ion mode. Analyst software (v.1.6.2) from AB Sciex was used for data acquisition and analysis. All MS parameters were optimized by direct infusion of solution of each analyte and source parameters (gas flows and temperatures) by flow injection. The ion source operated with spray voltage set at 5.3 kV, curtain gas at 24, ion source temperature at 550 °C, GS 1 70, GS 2 48; collision gas low. Analytes were detected using scheduled multiple reaction monitoring (MRM) acquisition, using 150 s detection window and 3 s target scan time; two transitions were monitored for each molecule. All the acquisition parameters are listed in the Tables S2 And S3. A Ultra AQ C18 column (100 × 2.1 mm, 3 µm; Restek, USA) was used; eluents were 5 mM AmAc in water (A) and acetonitrile (B), both containing 0.2% FoAc. The column temperature was kept at 35 °C. Chromatographic separation of the analytes was performed using a linear gradient; 10 µL injection volume was used. The column effluent was delivered to the mass spectrometer with no split.
+ Open protocol
+ Expand
2

Metabolomic Analysis Pipeline Using MetaboAnalyst

Check if the same lab product or an alternative is used in the 5 most similar protocols
Metabolites were searched using Analyst software (V.1.6.2) from AB SCIEX (Concord, ON, Canada). Principle component analysis (PCA) and statistical analyses were performed using MetaboAnalyst 5.0 (Pang et al., 2021 (link)). Pathway enrichment analysis was performed by entering the differential metabolites in the Pathway Analysis module of MetaboAnalyst 5.0 (https://www.metaboanalyst.ca). Venn diagrams were created using Venny 2.0.2 interactive tool (Oliveros, 2007–2015 ).
+ Open protocol
+ Expand
3

Quantifying Short-Chain Fatty Acids

Check if the same lab product or an alternative is used in the 5 most similar protocols
An amount of 50 µL of the diluted SCFA derivatives was injected into the LC-MS/MS system. Chromatographic separation of SCFAs was performed on an Acquity UPLC BEH C18 column (1.7 µm, Waters, Eschborn, Germany) using H2O (0.01% formic acid, FA) and acetonitrile (0.01% FA) as the mobile phases. The column flow rate was set to 0.35 mL/min and the column temperature was set at 40 °C. The gradient elution was performed as follows: 2 min at 15% B, 15%–50% B in 15 min, and then held at 100% B for 1 min. Lastly, the column was equilibrated for 3 min at 15% B. Mass spectrometric analysis of metabolites was performed QTRAP®5500 (AB Sciex, Framingham, MA, USA). For identification and quantitation, a scheduled multiple reaction monitoring (MRM) method was used, with specific transitions for every SCFA. Peak areas were determined in Analyst® Software (v. 1.6.2, AB Sciex) and areas for single SCFAs were exported. Normalization and statistics were performed with in-house written R scripts.
+ Open protocol
+ Expand
4

UHPLC-MS/MS Analysis of Molecular Compounds

Check if the same lab product or an alternative is used in the 5 most similar protocols
HPLC analysis was performed on a Shimadzu LC-30AD system (Shimadzu, Kyoto, Japan) which consist of two interconnected pump units: one with an integrated degasser and the other with a mixer, and is comprised of a UHPLC gradient system, a refrigerated autosampler, and a column oven compartment. Mass spectrometric detection was performed on an AB SCIEX QTRAP® 5500 (AB SCIEX instruments, Foster, CA, USA) in MRM mode and EPI mode. A Turbo V™ Ion Source (ESI) interface in positive ionization mode was used. Both the UHPLC and mass spectrometer were controlled remotely using Analyst® software v. 1.6.2 (AB SCIEX instruments, Foster City, CA, USA). A Waters BEH C18 column (1.7 µm 2.1 mm × 100 mm, Waters, Milford, MA, USA) was applied for analysis. The mass spectrometer was equipped with an electrospray ionization source and spectra were acquired in the positive ion multiple reaction monitoring (MRM) mode and enhanced product ion (EPI) scan modes. MS was optimized using a capillary voltage of 5.50 kV and desolvation temperature of 500 °C. The cone gas pressure and desolvation gas pressure were 50 psi. Nitrogen was used as the cone and collision gasses, respectively. The raw data were analyzed using an Analyst 1.6.2 workstation (AB SCIEX, Foster, CA, USA).
+ Open protocol
+ Expand
5

Simultaneous Quantification of Analytes via UPLC-MS/MS

Check if the same lab product or an alternative is used in the 5 most similar protocols
The analysis was conducted on a SHIMADZU Prominence LC system (Kyoto, Japan) coupled with a 5500 QTRAP mass spectrometer (AB SCIEX, Foster City, CA, USA), which includes a LC-20ADXR solvent delivery system, a DGU-20A3R automatic degasser, a SIL-20AXR autosampler and a CTO-20AC column oven. Chromatographic separation was performed at 40 °C on a Waters UPLC BEH C18 column (2.1 mm × 100 mm, 1.7 μm) The mobile phase consisted of a binary solvent system with ACN (A) and 0.1% formic acid in water (B), and run under the following parameters: 35% A at 0.01–0.5 min, 35–90% A at 0.5–9 min, 90% A at 9–11 min, 90–35% A at 11–12 min and 35% of A for 4 min to re-equilibrate the column. The injection volume was 2 μL and the flow rate was set to 0.3 mL/min.
The mass spectrometric detection was operated in the multiple reaction monitoring (MRM) mode with the negative electrospray ionization (ESI). The optimized ESI parameters included ion spray voltage of 4500 V, temperature of 550 °C, curtain gas of 0.24 Mpa, nebulizer gas of 0.38 Mpa and heater gas of 0.38 Mpa. The parameters of MRM transitions, declustering potential (DP) and collision energy (CE) of nine analytes were optimized using a syringe infusion pump and are listed in Table 2. Data acquisition and analysis were processed by the Analyst software (V.1.6.2) from AB SCIEX (Concord, ON, Canada).
+ Open protocol
+ Expand

About PubCompare

Our mission is to provide scientists with the largest repository of trustworthy protocols and intelligent analytical tools, thereby offering them extensive information to design robust protocols aimed at minimizing the risk of failures.

We believe that the most crucial aspect is to grant scientists access to a wide range of reliable sources and new useful tools that surpass human capabilities.

However, we trust in allowing scientists to determine how to construct their own protocols based on this information, as they are the experts in their field.

Ready to get started?

Sign up for free.
Registration takes 20 seconds.
Available from any computer
No download required

Sign up now

Revolutionizing how scientists
search and build protocols!