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6 protocols using w4018

1

GFP Protein Expression Analysis

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Samples were cultured in defined medium at special time. The cells extracts were subjected to SDS-PAGE and western blotting. The specific antibody, anti-GFP (MBL598), anti-Tubulin (MBL PM054), anti-Rabbit IgG (PROMEGA W4018) was used to enhance the luminescence intensity of the substrate. The protein imprint was detected by Western Blotting exposure meter (Tanon, 5200, multi).
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2

Protein Extraction and Western Blot Analysis

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Protein extracts were prepared by lysing cells with RIPA buffer (25 mM Tris-HCl (pH 7.6), 150 mM NaCl, 1 mM EDTA, 1% NP-40, 1% sodium deoxycholate, 0.1% SDS, 1 mM Na3VO4, 1 mM NaF, 0.1 mM PMSF, 10 μM aprotinin, 5 μg/mL leupeptin, 1 μg/mL pepstatin A). Protein samples were diluted using 2x Laemmli loading buffer, mixed, and boiled for 5 minutes at 95°C. Samples were analyzed by SDS/PAGE using a 10% acrylamide gel, followed by transfer onto PVDF membranes (Millipore IPVH00010). Membranes were blocked with 5% BSA (ThermoFisher) in Tris-buffered saline (50 mM Tris-HCl pH 7.5, 150 mM NaCl) and 0.1% Tween-20 for 1 hour at room temperature. Primary antibody labeling was done with anti-IRF3 (1:1,000) (Cell Signaling 4302S), anti-P-IRF3 (1:2,000) (Cell Signaling 4947S), anti-STAT1 (1:1,000) (EMD Millipore 06–501), anti-P-STAT (1:1,000) (Cell Signaling 7649), anti-IκB (1:1,000) (Santa Cruz sc-371), anti-P-IκB (1:1,000) (Cell Signaling 2859), anti-actin (1:10,000) (Sigma A2066), or anti-human IRF3 (1:500) [48 ] overnight at 4°C. Secondary antibody labeling was done using anti-rabbit or anti-mouse IgG-HRP conjugate (1:10,000) (Promega W4018, W4021) by incubating membranes for 2 hours at room temperature. Blots were imaged onto film using luminol enhancer (ThermoFisher 1859675).
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3

Western Blot Analysis of Cholesterol Transporters

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Whole cell lysates were isolated using 150 mM NaCl, 1% NP-40, 0.1% SDS, 100 mM Tris-HCl, pH 7.4, supplemented with protease inhibitors (Roche) and cleared by centrifugation at 4 °C for 10 min at 10,000 × g. Proteins lysates were separated by 4–12% SDS PAGE and then transferred to nitrocellulose membranes. The membranes were probed with monoclonal rabbit anti-SR-BI (Abcam, ab180383, 1:1,000), mouse monoclonal anti-ABCA1 (Abcam, ab18180, 1:1,000), rabbit polyclonal anti-ABCG1 (Novus Biologics, NB400-132, Lot F3, 1:1,000 dilution), or monoclonal mouse anti-GAPDH (Sigma, G8795, 1:10,000) in TBS-Tween20 containing 5% non-fat dry milk. HRP-conjugated secondary antibodies we used: anti-mouse (Promega, W4028, Lot 0000214819, 1:15,000) and anti-rabbit (Promega, W4018, Lot 0000212738, 1:20,000). Immune complexes were detected with Western Lightning Plus-ECL (Perkin Elmer) or Amersham ECL Prime Western Blotting Detection Reagent (GE Healthcare Life Sciences) chemiluminescent substrate.
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4

Cloning and Immunoprecipitation of Mouse Ciliary Proteins

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The coding sequence of mouse Cfap53 was cloned into the pxj40-HA vector (Roche), whereas those of mouse Dnaic1, Dnaic2, Dynll1, Ccdc114, Ccdc151 and Ttc25 were cloned into pxj40-MYC (Roche) and Dnah11(N-terminus 1-1000aa), Dnah11(N-terminus 1001-1700aa) were cloned into pxj40-GFP (Roche). The indicated combinations of plasmids were introduced into HEK293T cells in 10-cm dishes by transfection for 24 h with the use of the Lipofectamine 2000 reagent (Thermo Fisher Scientific). The cells were then lysed in 1 ml of RIPA buffer (Thermo Fisher Scientific) supplemented with cOmplete Mini protease inhibitors (EDTA-free, Roche) and subjected to immunoprecipitation with 2 μg of mouse monoclonal antibodies to HA, MYC or GFP together with 30 μl of protein A-agarose beads (Roche). The resulting immunoprecipitates as well as the cell lysates were then subjected to immunoblot analysis with rabbit polyclonal antibodies to HA, MYC or GFP. Immune complexes were detected with horseradish peroxidase-conjugated secondary antibodies to mouse (Promega, W4028) or rabbit (Promega, W4018) immunoglobulin G.
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5

Western Blot for MCP1 Gene Expression

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To detect the expression level of MCP1 gene from the perspective of protein level, western blot analysis was adapted. S. boulardii cultured in YPD medium was collected and washed with PBS buffer three times. Then, cells were resuspended in immunoprecipitation assay buffer (4 mol/L NaCl, 1 mol/L Tris-HCl, pH 7.5), 10% SDS, 1% NP-40, 10% C24H39O4Na, and 0.5 mol/L EDTA, and cell extracts were obtained. The latter was detected by sodium dodecyl sulfate polyacrylamide gel electrophoresis and transferred to polyvinylidene difluoride membranes per the standard procedures [46 (link)]. Anti-GFP (MBL598), anti-Tubulin (MBL PM054), and anti-Rabbit IgG (PROMEGA W4018) were used to enhance the luminescence intensity of the substrate. Samples were detected using a western blotting exposure meter (Tanon, 5200, multi).
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6

Protein Extraction and Detection for GFP-Tagged NPR1 and EIN3

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Samples treated with ACC or SA were immediately frozen and ground in liquid nitrogen. Equivalent volumes of ground powder were suspended in protein extraction buffer (100 mM Tris-HCl, pH 6.8, 4% [w/v] SDS, 10% [v/v] glycerol, 2% [v/v] b-mercaptoethanol, 100 mM DTT, and 0.02% [w/v] bromophenol blue). The extracts were thoroughly mixed, maintained on ice for 15 min, and then heated at 75°C for 10 min. After 13,000g centrifugation for 10 min, the supernatant was collected for detection. An anti-GFP antibody (ABclonal, AE012; 1:5000 dilution) was used together with an anti-mouse IgG horseradish peroxidase conjugate (Promega, W4028; 1:10,000 dilution) to detect target NPR1 proteins with GFP tag. Endogenous EIN3 antibody was from rabbit (1:5000 dilution; Guo and Ecker, 2003) and was used for EIN3 protein detection in combination with anti-rabbit IgG horseradish peroxidase conjugate (Promega, W4018; 1:10,000 dilution).
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