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Dyeex2.0 spin columns

Manufactured by Qiagen
Sourced in Germany

The DyeEx2.0 spin columns are a lab equipment product designed to remove unincorporated dye terminators from DNA sequencing reactions. They utilize a size-exclusion chromatography technique to efficiently separate the labeled DNA fragments from the excess dye-labeled terminators, facilitating the preparation of samples for DNA sequencing analysis.

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2 protocols using dyeex2.0 spin columns

1

In Vitro Protein Synthesis from mRNA

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Target protein synthesis was achieved using pIX2.0 plasmids in a linked system based on translationally active Sf21-lysates.
Transcription reactions were carried out similarly to the previously described tRNA transcription, using 60 µg/mL of purified plasmid DNA, NTPs and cap analogues. Generated mRNA was purified by gel filtration using either DyeEx2.0 spin columns (Qiagen, Hilden, Germany) or Nap5 columns (GE Healthcare, Freiburg, Germany) according to the manufacturer’s instructions.
The standard batch translation reaction mixture, ranging in volumes from 5–500 µL, contained 40% (v/v) Sf21 lysate, approximately 400 µg/mL coding mRNA, canonical amino acids (200 µM), ATP (1.75 mM) and GTP (0.45 mM). For monitoring protein quality and quantity reaction mixtures were supplemented either with 14C-labeled leucine (310.0 mCi/mmol, PerkinElmer, Waltham MA, U.S.A.) or 14C-labeled mannose (55 mCi/mL, ARC Inc., St. Louis MO, U.S.A.). Translation reactions were operated at 27 °C and 500 rpm in a thermomixer (Thermomixer comfort, Eppendorf, Hamburg, Germany) for 90–120 minutes. As negative controls, standard translation reactions were performed without the addition of mRNA (no-template control, NTC).
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2

HPV Genotyping by DNA Sequencing

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For DNA sequencing, 1 μL of the PCR products generated from HPV consensus PCR reaction was used for direct DNA sequencing. 1 μM of the sequencing primer (genotype specific primers) were mixed with 1 μL of the BigDye® Terminator (v 1.1/Sequencing Standard Kit), 3.5 μL 5× buffer, and 13.5 μL water in a total volume of 20 μL for 20 enzymatic primer extension/termination reaction cycles according to the instructions of the manufacturer (Applied Biosystems). After dye-terminator cleanup with Dye Ex 2.0-Spin columns (Qiagen, Germany), the reaction mixture was loaded in an automated ABI 310 Genetic Analyzer for sequence analysis. Sequence alignments were performed against various standard HPV genotype sequences stored in the GenBank database by on-line BLAST analysis. All of the samples were tested in duplicates. Controls for sample adequacy were included in the sequencing kit and were used for each run. Internal control for PCR polymerase inhibitors was used by amplification of human B globin gene (Lee et al., 2007).
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