The largest database of trusted experimental protocols

Plko 3g gfp shrna plasmids

Manufactured by Addgene

PLKO.3G GFP-shRNA plasmids are expression vectors that contain a green fluorescent protein (GFP) marker and a short hairpin RNA (shRNA) cassette. These plasmids can be used for gene knockdown experiments in cell culture systems.

Automatically generated - may contain errors

4 protocols using plko 3g gfp shrna plasmids

1

Lentiviral shRNA Knockdown Screening

Check if the same lab product or an alternative is used in the 5 most similar protocols
We purchased the pLKO.3G GFP-shRNA plasmids from Addgene. After 48 h of transfection, the viruses were collected from the medium. Cells were infected with the collected viruses over 2 days with the company of polybrene, which were then sorted via GFP signals for 4 days. The specific shRNA sequences were listed as follows: KAT2A-shRNA#1 Sense: 5-GATCCGTACCGGAGACACCAAGCAGGTCTATTTCTCGAG AAATAGACCTGCTTGGTGTCTTTTTTTGG-3; Anti-sense: 5-AATTCCAAAAAAAGACACCAAGCAGGTCTATTTCTCGAG AAATAGACCTGCTTGGTGTCTCCGGTACG-3. KAT2A-shR NA#2 Sense: 5-GATCCCCGGGCTGAACTTTGTGCAGTACAA CTCGAGTTGTACTGCACAAAGTTCAGCTTTTTGG-3; Anti -sense: 5-AATTCCAAAAAGCTGAACTTTGTGCAGTACAAC TCGAGTTGTACTGCACAAAGTTCAGCCCGGG-3. MCT1- shRNA#1 Sense: 5-GATCCCCGGGCTCCGTATTGTTTGA AACATCTCGAGATGTTTCAAACAATACGGAGCTTTTTGG-3; Anti-sense: 5-AATTCCAAAAAGCTCCGTATTGTTTGA  A A C A T CTCGAGATGTTTCAAACAATACGGAGCCCGGG-3; MCT1-shRNA#2 Sense: 5-GATCCCCGGTATGTTTCTGCTAG CTATATACTC G A G T A TATAGCTAGCAGAAACATATTTTTG G-3; Anti-sense: 5-AATTCCAAAAATATGTTTCTGCTAGCTA TATACTCGAGTATATAGCTAGCAGAAACATACCGGG-3.
+ Open protocol
+ Expand
2

Knocking Down Kidney Cancer Cells

Check if the same lab product or an alternative is used in the 5 most similar protocols
We purchased the pLKO.3G GFP‐shRNA plasmids from Addgene. After 48 h of transfection, the virus supernatant was obtained through centrifugation. We infected the cells with collected viruses combined with polybrene for 48 h, which were sorted by GFP signals. After seeded in the 24‐well plates, the kidney cancer cell lines (786‐O and ACHN) were then transfected with 20 nM siRNA oligos via RNAiMax reagent (Life Technology). Western blot assays were used to confirm the knockdown efficiency. The specific sequences of siRNA targets are summarized in Table S1.
+ Open protocol
+ Expand
3

Generating Lentiviral Vectors for Gene Knockdown and Overexpression

Check if the same lab product or an alternative is used in the 5 most similar protocols
The pLKO.3G GFP-shRNA plasmids were purchased from Addgene. The shRNA sequence of sh-SPOP#1: 5’-GGAGAACGCUGCAGAAAUU-3’; sh-SPOP#2: 5’-ATAAGTCCAATAACGACAGGC-3’; shINF2-#1: 5’- CCCUCUGUGGUCAACUACU-3’; shINF2-#2 (target to CAAX isoform only): 5’-ACAAAGAAACTGTGTGTGTGA-3’;23 shDRP1: 5’-GCCAGCUAGAUAUUAACAACAAGAA-3’. shControl: 5’- ACAGACUUCGGAGUACCUG-3’. Viruses were collected from the medium 48 hr after transfection. For knockdown experiments, cells were infected with the collected viruses over 48 hr in the presence of polybrene, followed by GFP sorting for 3–4 days. pTsin- lentivirus vectors were used for overexpression of HA(FLAG)-SPOP-WT or mutants.
+ Open protocol
+ Expand
4

Establishing SETDB2 gene knockdown and overexpression

Check if the same lab product or an alternative is used in the 5 most similar protocols
The pLKO.3G GFP‐shRNA plasmids were obtained from Addgene. The specific shRNA sequence of sh‐SETDB2#1: 5′‐CCGGCCCATTTCTTTCTGTAATGAACTCGAGTTCATTACAGAAAGAAATGGGTTTTTG‐3′;sh‐SETDB2#2:5′‐CCGGGCAATGATTCTAGTGAATGAACTCGAGTTCATTCACTAGAATCATTGCTTTTTG‐3′. Purinicin‐inducible GFP‐tagged lentiviral SETDB2 (Lenti‐SETDB2) were designed and synthesized by Shanghai Genechem (Shanghai, China). Cells infected with lentivirus were selected by 2 μg/mL of puromycin (Sigma, USA) to obtain stably infected cell lines. The siNRF2‐ and FAM‐labeled siNC were purchased from Guangzhou RiboBio (Guangzhou, China), and transfected.
+ Open protocol
+ Expand

About PubCompare

Our mission is to provide scientists with the largest repository of trustworthy protocols and intelligent analytical tools, thereby offering them extensive information to design robust protocols aimed at minimizing the risk of failures.

We believe that the most crucial aspect is to grant scientists access to a wide range of reliable sources and new useful tools that surpass human capabilities.

However, we trust in allowing scientists to determine how to construct their own protocols based on this information, as they are the experts in their field.

Ready to get started?

Sign up for free.
Registration takes 20 seconds.
Available from any computer
No download required

Sign up now

Revolutionizing how scientists
search and build protocols!