The largest database of trusted experimental protocols

7 protocols using mdivi

1

Lentiviral Transduction of Splenocytes

Check if the same lab product or an alternative is used in the 5 most similar protocols
A total of 1 × 106 splenocytes were stimulated with 5 µg/mL of LPS (InvivoGen) for 2 or 4 d in complete culture medium composed of Roswell Park Memory Institute medium (RPMI) supplemented with 10% fetal calf serum (Sigma), 0.05 mM 2-mercaptoethanol, 100 U/mL penicillin–streptomycin, 1 mM sodium pyruvate, and 0.1 mM nonessential amino acids (Gibco). Where indicated, cells were treated with 20 μM M1 and 10 μM Mdivi (Sigma) for 2 d from day 2 to day 4.
Stx5a-specific shRNAs were designed thanks to the RNAi consortium (https://portals.broadinstitute.org/gpp/public) and cloned in the pLKO.3G (Addgene #14748) vectors. Lentiviral particles were produced in the Human Embryonic Kidney 293T (HEK293T) cell line with the psPAX2 (Addgene #12260) and pMD2.G (Addgene #12259) vectors. For primary cell transduction, splenocytes were put in culture in complete culture medium in the presence of 80 ng/mL CD40L (Thermo Scientific) and 1 U/mL interleukin-4 (Miltenyi) for 24 h to promote B cell entry into cycle. The cells were then washed and transduced with lentiviral particles together with polybrene. After 24 h, cells were washed and differentiated into PCs by addition of LPS as indicated above.
+ Open protocol
+ Expand
2

Apoptosis Induction in Cell Cultures

Check if the same lab product or an alternative is used in the 5 most similar protocols
Cells (105/mL) were cultured to monolayer confluence in 60-mm culture dishes for 20 h, rinsed twice with PBS, then transfected with either pFlag or pFlag-B2 for 2 h. Cells were then treated with either 1 mM NAC or 5 µM Mdivi (both Sigma) at 28 °C for 48 and 72 h. After the medium was removed, the monolayers were washed with PBS, incubated with 100 μL of PI (Boehringer-Mannheim Mannheim, Germany) in HEPES buffer for 10–15 min and evaluated using fluorescence microscopy as previously described [26 (link)].
+ Open protocol
+ Expand
3

Induction and Metabolic Profiling of Zebrafish Larval Cells

Check if the same lab product or an alternative is used in the 5 most similar protocols
The detailed induction protocol has been described previously [10 ]. In brief, the induction solution consisted of 0.3× Danieau’s solution with 5 µM 4-OHT and 0.5% DMSO to enhance penetration of 4-OHT. A 10 mM stock of 4-OHT dissolved in 96% ethanol was stored at −20 °C protected from light. At 48 h post-fertilisation (hpf), selection marker positive (green heart) larvae were transferred to petri dishes containing 20 ml 4-OHT induction solution, at 50 larvae per dish. The larvae were then maintained at 28.5 °C in the dark. For Oxygen consumption rate (OCR) and glycolysis analysis using Seahorse ® analyser, the larvae were anaesthetised with 55 mg/L eugenol (Sigma) at 22 h post-induction (hpi), and screened. From the same clutch, larvae with GFP positive skin cells were collected as pre-neoplastic cell (PNC) group, and larvae with GFP negative skin were collected as Wild Type (WT) siblings. For drug treatment, larvae were screened at 8hpi, and positive larvae from CAAX group were used as controls. The sorted embryos carrying PNCs were randomly placed in fresh 4-OHT induction solution with appropriate drugs or vehicle control. IACS-010759 (Selleckchem, Catalog No.S8731) were used at 1 uM, metformin (Sigma-Aldrich, Product number: 31724) 50 uM, mdivi 1 µM (Sigma-Aldrich, product number: 475856) in induction solution.
+ Open protocol
+ Expand
4

Molecular Constructs for SOD2 and NME3 Studies

Check if the same lab product or an alternative is used in the 5 most similar protocols
The SOD2 expression vector, pAS3w.SOD2.bsd, was constructed by insertion of PCR products of pBI-EGFP-MnSOD, which was purchased from Addgene (plasmid #16612), at NheI (5′) and PmeI (3′) to pAS3w.bsd vector. Wild-type (WT) and N-terminal 30 amino acids deleted mutant (ΔN) of NME3-GFP expression vectors were constructed by insertion of PCR products amplified from NME3 cDNA at XhoI (5′) and HindIII (3′) to pEGFP-N1 vector. Tet-on expression vectors of Flag-NME3 were generated as described previously [4 (link)]. Mitochondrial Fusion promoter M-1 and Mdivi were purchased from Sigma-Aldrich (SML0629 for M-1, M0199 for Mdivi-1). Antibodies used in this study: γH2AX (Millipore, 05-636), Flag (Sigma-Aldrich, F3165), NME1/nm23-H1 (sc-343, Santa Cruz, Dallas, TX, USA), NME6 (GTX128818, Genetex, Irvine, CA, USA.), 8-oxoG/8-hydroxy-guanosine (ab62623, Abcam, Cambridge, UK), SOD2 (Millipore, 06-984), COX4 (4850S, Cell Signaling, Danvers, MA, USA), ATF4 (Cell Signaling, 11815S), MFN1 (Cell Signaling, 14739S), MFN2 (Abcam, ab56889), DRP1 (Cell Signaling, 8570S), SMCR7/Mid49 (16413-1-AP, Proteintech, Rosemont, IL, USA), SMCR7L/Mid51 (Proteintech, 20164-1-AP), β-tubulin (Sigma-Aldrich, T4026), β-actin (Sigma-Aldrich, A5441).
+ Open protocol
+ Expand
5

Modulation of HIV-1 Cell-to-Cell Transmission

Check if the same lab product or an alternative is used in the 5 most similar protocols
HIV-1-infected T cells were preincubated with 100 μM 2-aminoethyl diphenylborate (2-APB) (Merck), 5 μM oligomycin (Sigma), 1 μM nocodazole (Sigma), 50 μM Mdivi (Sigma), 10 mM EGTA (Fluka), 10 μM BAPTA-AM (Life Technologies), or 0.5% dimethyl sulfoxide (DMSO) as a control for 30 min prior to mixing with target T cells. 2-APB was removed by washing after treatment of HIV-1-infected cells. Infected cells were then mixed with target cells and processed for immunofluorescence microscopy as described above. Cell-free virus production was quantified with an enzyme-linked immunosorbent assay (ELISA) to measure p24 (35 (link)). Viability and ATP concentration of the treated cells were measured by trypan blue exclusion (Life Technologies) and CellTiter-Glo (Promega), respectively.
+ Open protocol
+ Expand
6

Western Blot Analyses of Cell Signaling

Check if the same lab product or an alternative is used in the 5 most similar protocols
For Western blot analyses we used antisera to RIPK1, JNK, P-JNK, β actin and PHB1 from Cell Signaling (Danvers, MD). RIPK1, DLP1/DRP1 antisera from BD biosciences and RIPK3 antibody from Imgenex (San Diego, CA), ProSci (Loveland CO) and Abgent (San Diego, CA) and MLKL antisera from Millipore (Darmstadt, Germany) were also used. Monoclonal RIPK3 antibody was provided by Dr. Kim Newton of Genentech (San Francisco, CA). BALB/3T3 lysate was obtained from Abcam (Cambridge, MA). Acetaminophen and Mdivi were purchased from Sigma Aldrich (St. Louis, MO). NAPQI adduct antisera was provided by Laura James at the University of Arkansas. Necrostatin-1 (Nec-1) and inactive necrostatin (Nec-1i) were from Calbiochem (San Diego, CA). Antisense oligonucleotide was provided by William Gaarde, (Isis pharmaceuticals, Carlsbad, CA). Refer to Supplemental Methods for ASO treatment protocol.
+ Open protocol
+ Expand
7

Mitochondrial Dynamics and Cell Death

Check if the same lab product or an alternative is used in the 5 most similar protocols
BRD, Mdivi, staurosporine, and rotenone were purchased from Sigma-Aldrich. Z-VAD FMK was purchased from R&D systems. MitoTracker Mitochondrion-Selective Probes were purchased from Invitrogen. Trizol was purchased from Life Technologies. M-MLV Reverse Transcriptase and RNasin Ribonuclease Inhibitor were purchased from Promega. Oligo(dT) primer was purchased from Fermentas Life Sciences and PCR Nucleotide Mix was purchased from GE Healthcare. Brilliant III Ultra-Fast SYBR Green QPCR Master Mix was purchased from Agilent Technologies. α/β-Tubulin rabbit, cleaved caspase-3 rabbit, DRP1 rabbit, phospho-DRP1 (Ser616) rabbit, HSP90 Rabbit, HMGB1 Rabbit, COX IV Rabbit, and anti-rabbit IgG HRP-linked antibodies were purchased from Cell Signaling Technology. Nlrx1 polyclonal antibody was purchased from Proteintech.
+ Open protocol
+ Expand

About PubCompare

Our mission is to provide scientists with the largest repository of trustworthy protocols and intelligent analytical tools, thereby offering them extensive information to design robust protocols aimed at minimizing the risk of failures.

We believe that the most crucial aspect is to grant scientists access to a wide range of reliable sources and new useful tools that surpass human capabilities.

However, we trust in allowing scientists to determine how to construct their own protocols based on this information, as they are the experts in their field.

Ready to get started?

Sign up for free.
Registration takes 20 seconds.
Available from any computer
No download required

Sign up now

Revolutionizing how scientists
search and build protocols!