The largest database of trusted experimental protocols

10 protocols using glass capillary

1

Native Mass Spectrometry of Fdc Protein

Check if the same lab product or an alternative is used in the 5 most similar protocols
Protein was buffer exchanged into 100 mM ammonium acetate using a 10-DG desalting column (BioRad). Native mass spectrometry experiments were carried out on a Synapt G2 instrument (Waters, Manchester, UK) with a nanoelectrospray ionisation (nESI) source. Mass calibration was performed by a separate infusion of NaI cluster ions. Solutions were ionised through a positive potential applied to a platinum wire of thickness 0.125 mm (Goodfellow) inserted into a thin-walled glass capillary (inner diameter 0.9mm, outer diameter 1.2mm, World Precision Instruments, Stevenage, UK) that was pulled to a nESI tip in house with a Flaming/Brown micropipette puller (Sutter Instrument Co., Novato, CA). Fdc samples (5-10μM) were sprayed from 100mM ammonium acetate pH, 6.8. Capillary voltage 1.6 kV, sample cone voltage 80-90V, extractor cone voltage 3V, backing pressure 5 mbar, source temperature 50°C, Trap gas flow 0.4-5 ml/min. Data were processed using Masslynx V4.1 software and Originlab 9.0.
+ Open protocol
+ Expand
2

Whisker Stimulation Protocol

Check if the same lab product or an alternative is used in the 5 most similar protocols
Whisker stimulation was achieved by inserting individual whiskers into a glass capillary (1.5 mm outer diameter, World Precision Instruments, Florida) glued to a piezo actuator activated by a computer controlled amplifier (E-650 LVPZT, Physik Instrumente, Germany). Stimulation consisted in rostro-caudal deflections of ∼1 mm, delivered for 2 s at controlled frequencies (1, 5, 10, or 25 Hz).
+ Open protocol
+ Expand
3

Silanized coverslip DNA microarray fabrication

Check if the same lab product or an alternative is used in the 5 most similar protocols
A 24×60 mm #1 thickness coverslip (Thermo scientific) was silanized with 3-Aminopropyldimethyl-ethoxysilane (ABCR) following literature protocols30 (link).
The DNA solution containing 1 % (w/v) nuclease-free Bovine Serum Albumin (Carl Roth) in nuclease-free water, was micro-spotted under humid atmosphere onto the silanized coverslip using the GIX Microplotter II (Sonoplot) and a glass capillary with a 30 μm tip diameter (World Precision Instruments) according to the manufacturer’s instructions in a rectangular 40×16 pattern with 320 μm column pitch and 678 μm row pitch. Alignment of the DNA array and the microfluidic chip was done manually using a stereomicroscope. Bonding between the glass cover slip and microfluidic device was achieved by thermal bonding for 5 h at 80 °C on a hot plate.
Details on device operation and force spectroscopy measurements can be found in the supplementary information.
+ Open protocol
+ Expand
4

Microinjection of VMO/ASO-hybrid into Zebrafish Larvae

Check if the same lab product or an alternative is used in the 5 most similar protocols
A glass capillary of 3 inches length, OD 1.0 mm, with no filament (World Precision Instruments, Sarasota, Florida, USA) was pulled by a vertical pipette puller (David Kopf Instruments, Tujunga, California, USA). The tip was then clipped using a sharp straight Noyes Scissors 4.7 (World Precision Instruments, Sarasota, FL), and loaded with 5 μl of the VMO/ASO-hybrid prepared as described above. Three days post fertilization (dpf) larvae were anesthetized by transferring them using a plastic transfer pipette into a 0.64 mM Tricaine (pH 7.0) and incubating it for 5 seconds. The anesthetized larvae were laid on a 1.2% agarose plate and injected intravenously into the common cardinal vein with 15 nl of VMO/ASO-hybrid using Picospritzer III (Parker Precision Fluidics, Hollis, NH) and a micromanipulator under a dissection microscope. Following the injection, the larvae were transferred to E3 embryonic medium in a plastic cup at 28°C and incubated for 48 hours for use in laser-induced arterial thrombosis assay.
+ Open protocol
+ Expand
5

Silanized coverslip DNA microarray fabrication

Check if the same lab product or an alternative is used in the 5 most similar protocols
A 24×60 mm #1 thickness coverslip (Thermo scientific) was silanized with 3-Aminopropyldimethyl-ethoxysilane (ABCR) following literature protocols30 (link).
The DNA solution containing 1 % (w/v) nuclease-free Bovine Serum Albumin (Carl Roth) in nuclease-free water, was micro-spotted under humid atmosphere onto the silanized coverslip using the GIX Microplotter II (Sonoplot) and a glass capillary with a 30 μm tip diameter (World Precision Instruments) according to the manufacturer’s instructions in a rectangular 40×16 pattern with 320 μm column pitch and 678 μm row pitch. Alignment of the DNA array and the microfluidic chip was done manually using a stereomicroscope. Bonding between the glass cover slip and microfluidic device was achieved by thermal bonding for 5 h at 80 °C on a hot plate.
Details on device operation and force spectroscopy measurements can be found in the supplementary information.
+ Open protocol
+ Expand
6

Patch-clamp analysis of hippocampal neuron mIPSCs

Check if the same lab product or an alternative is used in the 5 most similar protocols
GABA-mediated inhibitory postsynaptic currents in miniature (mIPSCs) were recorded using the patch-clamp technique in the whole cell voltage-clamp configuration in the presence of 1 µM tetrodotoxin (TTX, Tocris) to block the generation of action potentials. Recordings were obtained from primary hippocampal neurons at DIV14 (plated on poly-L-lysine coated coverslips at the density of 234 cells/mm2) using the Axopatch 200B amplifier and the pClamp-10 software (Axon Instruments). Recordings were performed in Krebs’-Ringer’s-HEPES (KRH) external solution (mM: 125 NaCl, 5 KCl, 1.2 MgSO4, 1.2 KH2PO4, 2 CaCl2, 6 glucose, 25 HEPES-NaOH pH 7.4). Recording pipettes were pulled from glass capillary (World Precision Instrument) using a two-stage puller (Narishige) and had tip resistances of 3–5 MΩ when filled with the intracellular solution (mM: 130 Cs-gluconate, 8 CsCl, 2 NaCl, 10 HEPES, 4 EGTA, 4 MgATP, 0.3 GTP pH 7.3). Voltage-clamp recordings were performed at holding potentials of +10 mV. The recorded traces were analysed using Clapfit-pClamp 10 software, after choosing an appropriate threshold. In particular, events that exceeded at least twice the standard deviation of the baseline noise were considered as mIPSCs and included in our analyses.
+ Open protocol
+ Expand
7

Patch Clamp for Membrane Potential

Check if the same lab product or an alternative is used in the 5 most similar protocols
Membrane potential was measured with the ruptured whole-cell patch clamp. Microelectrodes were pulled from glass capillary (World Precision Instruments, Sarasota, FL, USA) by a pipette puller (Sutter Instrument, Novato, CA, USA) and polished with a micro forge (NARISHIGE, Japan). The microelectrodes used in experiments were typically 3–6 MΩ after they were filled with the internal solution. Both microelectrodes and solutions were prepared freshly before experiments. Axopatch 200B amplifier (Molecular Devices, Sunnyvale, CA, USA) was used to amplify the signal detected by the microelectrode. pClamp 10.4 software (Molecular Devices) was used for recording signals. Action potential (AP) data were analyzed with Cardiac Action Potential Analysis Software (CAPA) Package Distributed by Science Consulting Cardiac Cellular Electrophysiology UG (Essen, Germany) [23 ].
+ Open protocol
+ Expand
8

Native Mass Spectrometry of Fdc Protein

Check if the same lab product or an alternative is used in the 5 most similar protocols
Protein was buffer exchanged into 100 mM ammonium acetate using a 10-DG desalting column (BioRad). Native mass spectrometry experiments were carried out on a Synapt G2 instrument (Waters, Manchester, UK) with a nanoelectrospray ionisation (nESI) source. Mass calibration was performed by a separate infusion of NaI cluster ions. Solutions were ionised through a positive potential applied to a platinum wire of thickness 0.125 mm (Goodfellow) inserted into a thin-walled glass capillary (inner diameter 0.9mm, outer diameter 1.2mm, World Precision Instruments, Stevenage, UK) that was pulled to a nESI tip in house with a Flaming/Brown micropipette puller (Sutter Instrument Co., Novato, CA). Fdc samples (5-10μM) were sprayed from 100mM ammonium acetate pH, 6.8. Capillary voltage 1.6 kV, sample cone voltage 80-90V, extractor cone voltage 3V, backing pressure 5 mbar, source temperature 50°C, Trap gas flow 0.4-5 ml/min. Data were processed using Masslynx V4.1 software and Originlab 9.0.
+ Open protocol
+ Expand
9

Microinjection of VMO/ASO-Hybrid in Zebrafish

Check if the same lab product or an alternative is used in the 5 most similar protocols
A glass capillary of 3 inches length, OD 1.0 mm, with no filament (World Precision Instruments, Sarasota, Florida, USA) was pulled by a vertical pipette puller (David Kopf Instruments, Tujunga, California, USA). The tip was then clipped using a sharp straight Noyes Scissors 4.7 (World Precision Instruments, Sarasota, FL), and loaded with 5 µl of the VMO/ASO-hybrid prepared as described above. Three days post fertilization (dpf) larvae were anesthetized by transferring them using a plastic transfer pipette into a 0.64 mM Tricaine (pH 7.0) and incubating it for 5 seconds. The anesthetized larvae were laid on a 1.2% agarose plate and injected intravenously into the common cardinal vein with 15 nl of VMO/ASO-hybrid using Picospritzer III (Parker Precision Fluidics, Hollis, NH) and a micromanipulator under a dissection microscope. Following the injection, the larvae were transferred to E3 embryonic medium in a plastic cup at 28 °C and incubated for 48 hours for use in laser-induced arterial thrombosis assay.
+ Open protocol
+ Expand
10

Intrathoracic Injection of Adult Females

Check if the same lab product or an alternative is used in the 5 most similar protocols
Adult females with ages ranging from 5 to 22 days old were blood-fed using a glass water jacketed membrane feeder. The next day, females were immobilized by incubation at 4° until motionless, then placed on ice and sorted. Females with visible blood-meals were injected intrathoracically using a glass needle drawn from a glass capillary (World Precision Instruments) using a needle puller (Sutter P2000) and aspirator assembly (A5177, Sigma) until we could observe visible distention of the abdomen, diuresis or liquid emerging from the injection site (approximately 200 nl).
+ Open protocol
+ Expand

About PubCompare

Our mission is to provide scientists with the largest repository of trustworthy protocols and intelligent analytical tools, thereby offering them extensive information to design robust protocols aimed at minimizing the risk of failures.

We believe that the most crucial aspect is to grant scientists access to a wide range of reliable sources and new useful tools that surpass human capabilities.

However, we trust in allowing scientists to determine how to construct their own protocols based on this information, as they are the experts in their field.

Ready to get started?

Sign up for free.
Registration takes 20 seconds.
Available from any computer
No download required

Sign up now

Revolutionizing how scientists
search and build protocols!