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8 protocols using gtx100064

1

Western Blot Analysis of Mitochondrial Proteins

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We separated protein samples with SDS-PAGE gels. After that, it was transferred to PVDF membranes (Millipore, USA). Then blocked the membranes with non-fat milk (5%) which was diluted with TBST, and incubated the membranes with primary antibodies overnight at 4 °C. Second day, after three times 10-min TBST washes, we incubated the membranes with the appropriate secondary antibodies (1:5000) at 27 °C for 2 h. Lastly, after the three times of 5-min TBST washes, detect the protein bands with a BioRad imaging system (Bio-Rad, USA). The primary antibodies were listed as below: SIRT3(1:1000, C73E3, Cell Signaling), Ac-lys (1:1000,9441S, Cell Signaling), phospho-AMPK (1:1000, D4D6D, Cell Signaling), AMPK (1:1000, 2532S, Cell Signaling), Mfn2 (1:1000, D2D10, Cell Signaling), Mfn1 (1:1000, A9880, ABclonal), Bax (1:1000, gtx32465, Gene Tex), Bcl2 (1:1000, gtx100064, Gene Tex),β-actin(1:3000, wh096194, Wanleibio).
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2

Western Blot Quantification of Cellular Proteins

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The selected samples were collected and homogenized in lysis buffer containing 1% protease inhibitor. Protein concentrations were measured using a BCA Protein Assay kit (Thermo Scientific). Protein samples were separated on sodium dodecyl sulphate‐polyacrylamide gel electrophoresis gels and transferred to polyvinylidene fluoride membranes (Millipore). Following blocking in 5% skim milk solution in tris‐buffered saline with Tween 20 (TBST), incubated the membranes with primary antibody at 4°C for 12 hours. Next, incubated the membranes with the corresponding horseradish peroxidase‐conjugated secondary antibodies (1:5000, WH112425, ABclonal) for 2 hours, followed by three 5 minutes TBST washes. Protein bands were visualized using the BioRad imaging system (Bio‐Rad). The following primary antibodies were used: anti‐p‐Smad3 (1:1000, ab52903, Abcam), anti‐Smad3 (1:1000, ab28379, Abcam), anti‐ATF4 (1:1000, D4B8, Cell Signaling), anti‐CHOP (1:1000, L63F7, Cell Signaling), anti‐VDAC (1:1000, D73D12, Cell Signaling), anti‐PGC‐1α (1:1000, 4C1.3, Calbiochem), anti‐Bax (1:1000, gtx32465, Gene Tex), anti‐Bcl2 (1:1000, gtx100064, Gene Tex), anti‐cytochrome c (1:1000, wh118104, Wanleibio), anti‐β‐actin (1:3000, wh096194, Wanleibio), anti‐GAPDH (1:3000, LM16989, Proteintech).
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3

Western Blot Analysis of Signaling Pathways in hESCs

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After NaF treatment, total protein from hESCs was isolated using the mirVana™ miRNA Isolation kit (Life technologies). Protein lysates (50 μg/sample) were analyzed by western blot using primary antibodies, including mouse anti-human JNK (SC-7345, Santa Cruz Biotechnology, Santa Cruz, CA), mouse anti-human p-JNK (SC-293136, Santa Cruz Biotechnology), rabbit anti-human ERK (GTX59618, Genetex, Irvine, CA), rabbit anti-human p-ERK (2219–1, Epitomics, Burlingame, CA), rabbit anti-human BCL-2 (GTX100064, Genetex), rabbit anti-human BAX (GTX109683, Genetex) and mouse anti-human GAPDH (TA08, ZSGB-BIO, Beijing, China). The horseradish peroxidase (HRP)–conjugated donkey anti-mouse IgG (ZB5305, ZSGB-BIO) or donkey anti-rabbit IgG (ZB5301, ZSGB-BIO) were used as secondary antibodies. SuperSignal West Pico Trial Kit (Thermo Scientific, Rockford, IL) was applied for protein detection. The intensity of individual bands was quantified using the ImageJ densitometry software.
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4

Protein Expression and Apoptosis Profiling

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Cells were lysed in radioimmunoprecipitation assay (RIPA) buffer (Merck Darmstadt, Germany) containing protease and phosphatase inhibitors (Roche Applied Science, Germany). The cell lysates were centrifuged at 12,000× g for 10 min at 4 °C to remove insoluble materials. The samples were subjected to sodium dodecyl sulfate-polyacrylamide gel electrophoresis, transferred to a polyvinylidene fluoride (PVDF) membrane and probed with the indicated antibodies, including anti-poly (ADP-ribose) polymerase (PARP), anti-BCL-2, anti-MCL1, anti-p53, anti-Caspase-8, anti-ALDH2, anti-β-actin (GeneTex, GTX100573, GTX100064, GTX102026, GTX102965, GTX110723, GTX101429, and GTX109639, Irvine, CA, USA), anti-phospho-Akt/Akt, anti-cleavedCaspase-3/Caspase-3 (Cell Signaling Technology, CST4060S/9272S, CST9664S/9665S, Danvers, MA, USA), and anti-Bax (Merck Millipore, 04-434, Burlington, MA, USA). Proteins were visualized using enhanced chemiluminescence (Merck Millipore, Burlington, MA, USA).
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5

Immunohistochemical Analysis of Glial Cells

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For the immunohistochemical staining, paraffin-embedded brain sections (10 µm) from various treatment groups were dewaxed in xylene and rehydrated through a graded ethanol series, followed by a rinse in PBS for 3 min. Antigen was retrieved via a heat treatment with 0.1% citrate buffer (pH 6.0) for 15 min. Sections were then permeabilized and blocked for 60 min in 5% BSA and 0.2% Triton X-100. After blocking, sections were subsequently incubated with primary antibody overnight at 4 °C. The rabbit polyclonal anti-Iba1 (GeneTex, GTX100064, 1:200) or rabbit polyclonal anti-GFAP (GeneTex, GTX108711, 1:400) were used as the primary antibodies. Following overnight incubation, sections were washed in PBS and incubated with VECTASTAIN Elite ABC HRP Kit (Peroxidase, Rabbit IgG and Mouse IgG) for an hour at room temperature. All images were acquired using a microscope (IX70, Olympus, Tokyo, Japan) attached to a digital camera and SPOT imaging software. Quantification of the numbers of GFAP- and Iba-1-positive cells in the hippocampus was performed with Image J software as we described previously [25 (link)].
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6

Evaluating Anticancer Effects of B. coagulans

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H22 cells (3 × 105cells/hole) in a logarithmic growth phase were plated in a 6-well plate and were incubated with B. coagulans MZY531 (MOI = 0, 50, 100) and 5-FU (100 µg/mL). After 24 h, the whole cell extract was prepared with RIPA buffer containing 1 mm PMSF. The protein concentration was detected by the BCA method, separated by SDS-PAGE electrophoresis, and transferred to the PVDF membrane. Western blot analysis was performed using the following primary anti-rabbit monoclonal antibodies: β-actin (bsm-52846R, BIOSS), PI3K (bs-10657R, BIOSS), p-PI3K (bs-5570R, BIOSS), AKT (bs-0115R, BIOSS), p-AKT (bs-0876R, BIOSS), mTOR (bsm-54471R, BIOSS), p-mTOR (bs-5331R, BIOSS), and Bax (GTX109683, GeneTex), caspase-3 (GTX110543, GeneTex) and Bcl-2 (GTX100064, GeneTex). The membrane was incubated with anti-rabbit second antibody conjugated with horseradish peroxidase at 37 ℃ for 1 h. the strips were quantified using image quant Las 4000 (Fuji film, Tokyo, Japan), and β-actin was used as a loading control.
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7

Western Blot Analysis of Brain Proteins

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Brain tissue or collected cells were ultrasonically homogenized in cold lysis buffer with protease and phosphatase inhibitors. Protein levels were determined using a BCA Protein Assay kit (Thermo Scientific, MA, USA, UA276918). SDS–PAGE was used to separate the extracted proteins, which were then transferred to PVDF membranes (Millipore). After incubation with 5% nonfat milk, the blots were probed with the following primary antibodies: anti-FNDC5 (1:1000; ab174833, Abcam); anti-SIRT3 (1:1000; D22A3, Cell Signaling Technology); anti-Bcl2 (1:1000; gtx100064, Gene Tex); anti-Bax (1:1000; 50599-2-Ig, ProteinTech); anti-Nrf2 (1:1000; 16396-1-AP, ProteinTech); and anti-β-actin (1:3000; WL01372, Wanleibio), the primary antibodies were used to incubate membranes overnight at 4 °C. After incubation with HRP-conjugated secondary antibodies (1:5000; AS003, AS014, ABclonal)for 2 h at room temperature, the bands were visualized by chemiluminescence using a Bio-Rad Imaging System (Bio-Rad) and analyzed with ImageJ software.
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8

Hepatitis B Virus Protein Detection Protocol

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The following primary antibodies were used in this study: rabbit anti-PKM2 (CST 4053, Cell Signaling Technology), rabbit anti-HBsAg (ad/ay, PAB13969, Abnova), normal mouse IgG (sc-2025, Santa Cruz Biotechnology), normal rabbit IgG (sc-2027, Santa Cruz Biotechnology), rabbit anti-HBcAg (B0586, DAKO), mouse anti-HA-tag (sc-7392, Santa Cruz Biotechnology), mouse anti-HSC70 (sc-7298, Santa Cruz Biotechnology), rabbit anti-SNAP-tag (P9310, New England BioLabs), rabbit anti-beta-tubulin (NB600-936, Novus Biologicals), mouse anti-beta-actin (NB600-501, Novus Biologicals), rabbit anti-GAPDH (GTX100118, GeneTex), rabbit anti-Grp78 (GTX113340, GeneTex), rabbit anti-PLK1 (GTX104302, GeneTex), rabbit anti-MAD2L1 (GTX104680, GeneTex), rabbit anti-Bcl-2 (GTX100064, GeneTex), and rabbit anti-PCNA (GTX100539, GeneTex). Mouse anti-LHBS/PreS1 (7H11), mouse anti-SHBS (86H6), and mouse anti-HBx (20F3) were kindly provided by Professor Ning-Shao Xia (Xiamen University, China) [33 (link)]. The following secondary antibodies were used in this study: peroxidase-conjugated AffiniPure goat anti-rabbit IgG (H+L, 111-035-003, Jackson ImmunoResearch), peroxidase-conjugated AffiniPure goat anti-mouse IgG (H+L, 115-035-003, Jackson ImmunoResearch), Alexa Fluor 488 donkey anti-rabbit IgG (H+L, A21206, Invitrogen) and Alexa Fluor 647 donkey anti-mouse IgG (H+L, A31571, Invitrogen).
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