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5 protocols using anti mhcii efluor450

1

Comprehensive Immune Cell Profiling

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All antibody staining was preceded by 15 min of 1:50 FcγR block in FC buffer, on ice. Extracellular antibodies were then added to FC buffer containing FcγR block, and incubated for 45 min on ice. Intracellular staining was accomplished after surface staining using the Foxp3 staining kit (eBioscience). Myeloid subsets were stained with anti-CD1lb-FITC, anti-Ly6C-AF700, anti-MR-PE-Cy7, anti-CD11c-PE/Dazzle594, anti-Ly6G-BV605 (BioLegend), anti-MHCII-eFluor450 (eBioscience), and anti-F4/80-APC (BioRad). To evaluate Tregs, cells were stained with anti-CD3-AF488, anti-CD4-APC, anti-CD25-PerCP-Cy5.5 (BioLegend), and anti-Foxp3-PE (BD Pharmingen). To assess T cell activation, total tumor cells were incubated for 4 hr at 37°C in a 5% CO2 incubator with Protein Transport Inhibitor Cocktail containing brefeldin A and monensin, or with Cell Stimulation Cocktail containing protein transport inhibitors and PMA/ionomycin (eBioscience). Cells were then stained with anti-CD3-AF488, anti-CD4-PE, and anti-CD8-PerCP-Cy5.5 followed by intracellular stain with anti-IFNγ-APC (BioLegend). In addition, 1E5 CD3+ cells were stimulated with 4E4 CD3/CD28 Dynabeads (ThermoFisher) for 3 days, followed by staining using anti-CD3-PerCP-Cy5.5, anti-CD8-BV650, anti-CD4-BV605, anti-IFNγ-APC, anti-TNFα-BV421 (BioLegend), and anti-GranzymeB-PE (eBioscience).
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2

Muscle Immune Cell Isolation and Analysis

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Damaged TA muscles were collected and minced and then gently digested with 0.2% IIcollagenase at 37 °C for 45 min twice. Total cells isolated from muscle homogenate were re-suspended in fluorescence-activated cell sorting buffer (phosphate buffer solution, 0.5% bovine serum albumin, 2 mM EDTA) to obtain a single-cell suspension. After Fc receptor blocking with anti-CD16/CD32 (Biolegend, USA), cells were incubated with anti-CD45-Pacific Blue, anti-F4/80-PE, anti-Ly-6C-FITC, anti-CD11b-PE, anti-CD3ε-APC, anti-CD4-FITC, anti-IFN-γ-PE, anti-IL-4-APC, anti-IL-17α-PE-Cy7, anti-CD25-PE, anti-Foxp3-APC (1:100, ThermoFisher, USA), anti-T-bet-BV421(1:100, BD Biosciences, USA), anti-CTLA-4-APC (1:100, eBioscience, California, USA), anti-MHC-II-eFluor 450 (1:100, eBioscience, California, USA), and anti-CX3CR1-APC (1:100, Bioss, China). Labeled cells were analyzed with a FACSAria II cell sorter (BD Biosciences, USA) and FlowJo software. For cell sorting, mice were sacrificed on day 3 and 6 after CTX-myoinjury. Muscle samples were collected, minced, and incubated with anti-CD45-Pacific Blue and anti-F4/80-PE on day 3, or incubated with anti-CD3ε-APC and anti-CD4-FITC on day 6. CD45+ F4/80+ cells, or CD3ε+CD4+ cells were sorted by MoFlo XDP, for further RNA preparation and qRT-PCR analysis.
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3

Multiparametric Flow Cytometry of Immune Cells

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Tumors were dissociated as for cell inoculation and subjected to flow cytometry (FC) analysis, gating on live cells lacking staining with Live/Dead Aqua (ThermoFischer). All antibody staining was preceded by FcγR block on ice (eBioscience/Fisher). Extracellular antibodies were then added and samples were incubated on ice. Intracellular staining was accomplished after surface staining using the FoxP3 staining kit (eBioscience). To evaluate myeloid subsets, total cells were stained with anti-CD11b-FITC, anti-CD45-BV650, anti-Ly6C-AF700, anti-MR-PE-Cy7, anti-CD11c-PE/Dazzle594, and anti-Ly6G-BV605 (BioLegend); anti-MHCII-eFluor450 (eBioscience); anti-CD86-PE (Miltenyi); and anti-F4/80-APC (BioRad). T cells were enumerated by staining with anti-CD45-AF700, anti-CD3-AF488, anti-CD4-PE, anti-CD8-BV655, and anti-CD69-APC-Cy7 (BioLegend), followed by intracellular stain with anti-IFNγ-APC (BioLegend). To evaluate Tregs, total cells were stained with anti-CD3-AF488, anti-CD4-BV605, and anti-CD25-PerCP-Cy5.5 (BioLegend), and then stained intracellularly with anti-FoxP3-PE (BD Pharmingen).
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4

Immunofluorescence Imaging of Mouse Lungs

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Lungs from GREATxSMART mice were perfused with 5 mM EDTA and 1% PFA prior to removal and incubated at 4°C in 1% PFA and 30% sucrose for 24 h each, frozen in OCT and stored at –80°C. Ten micrometre lung sections were cut onto SuperFrost microscope slides (ThermoFisher) and stored at –20◦C prior to staining. Sections were incubated in Fc block (24G2) for 10 min to block non-specific binding, washed in 0.5% BSA/PBS (ThermoFisher), and stained with antibodies overnight. Antibodies used: anti-GFP (Life Technologies), anti-CD4 AF647 (BD; clone: RM4-5), anti-CD8b APC (BioLegend, clone; 53-5.8), anti-EpCAM AF594 (BioLegend: G8.8), and anti-MHCII eFluor450 (ThermoFisher; clone: M5114), slides were washed in 0.5% BSA/PBS and mounted using Vectashield mounting reagent (Vector Laboratories). Immunofluorescence images were acquired using a Zeiss LSM800 microscope, analysed using Volocity (version 7, Quorum Technologies), and example images were generated on Zen 2 lite.
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5

Muscle-Derived Immune Cell Profiling

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Using 0.2% II type collagenase (Sigma, USA), inflamed TA muscles were collected and digested for 40 min at the condition of 37 °C. In vivo, the single cell suspension obtained from muscle homogenate was blocked. In vitro, cultured cells were digested with Trypsin (Sigma, USA), resuspended in ice cold PBS to obtain the single cell suspension. The following fluorescent antibodies were used: anti-CD45-Pacific Blue, anti-F4/80-PE, anti-CD11b-PE, anti-MHC-II-eFluor 450, anti-Ly6C-FITC, anti-CX3CR1-APC, anti-CD206-eFluor 700, anti-Bcl3-FITC, anti-CD31-APC, anti-IL-10-FITC, rabbit anti-p-STAT3-FITC, the antibodies above were purchased from ThermoFisher and their dilution ratios were 1:100; Other antibodies involved anti-Vav1-FITC (1:100, Biorbyt, USA), anti-Rac1-GTP-FITC (1:100, Proteintech, USA), anti-Tunel-FITC (5:50, Yeason, China), anti-Annexin-V-APC (5:100, Sigma, USA), anti-CRT-Alexa Fluor 647 (1:100, Abcam, UK), anti-PKH67-Alexa Fluor 647 (1:250, Zeye, China), anti-CD36-Alexa Fluor 700 (1:100, eBioscience, USA), and anti-PPARγ-FITC (1:100, Abcam, UK). To analyze the labeled cells, FACSAria II cell sorter with FlowJo software (BD Biosciences, USA) were used.
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