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4 protocols using anti foxd1

1

Immunohistochemical Analysis of FOXD1, KI67, PCNA, and GLUT1

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After fixing, embedding, sliding, and deparaffinizing, tissue sections were blocked with 3% H2O2 and 5% BSA. Then sections were incubated with anti-FOXD1(Invitrogen, Cat No. PA5-35145), anti-KI67 (Proteintech, Cat No. 27309-1-AP), anti-PCNA (Proteintech, Cat No. 10205-2-AP), and anti-GLUT1(abcam, Cat No. ab115730) antibodies at 4 °C overnight. After washing with PBS, immunohistochemical secondary antibody was applied to the sections for 1 h at room temperature, followed by DAB staining, hematoxylin re-staining, and imaging. The results were evaluated blindly by two independent pathologists.
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2

Immunofluorescence and Immunohistochemistry Analysis of GSCs

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Following antibodies were used for IF and IHC analysis. Anti-USP21 (catalog MA5-34953), anti-FOXD1 (catalog PA5-35145) were purchased from Invitrogen. Anti-ALDH1A3 (catalog ab129815) was purchased from Abcam. Anti-CD44 (catalog 3570) was purchased from Cell Signaling Technology.
GSCs were fixed in 4% formaldehyde for IF staining, permeated with 0.25% Triton X-100, and then blocked with 1% BSA at room temperature for 1 h. The cells were probed with the primary antibody. After washing by PBS-T, cells were combined with the Alexa Fluor 488 (abcam, catalog ab150113) or Alexa Fluor 647 (abcam, catalog ab150079) labeled secondary antibody.We used a mounting medium containing DAPI (abcam, catalog ab104139). The samples were observed through a confocal laser scanning microscope. For IHC staining, the slides were handled as before [29 (link)]. If <10% of the cells in the tumor area were stained, the result would be classified as negative. If the staining were 10% to 100%, the result would be positive. The percentage of positive tumor cells per slide (10–100%) multiplied by the main intensity pattern of staining (1, weak; 2, medium; 3, strong).
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3

Western Blot Analysis of FOXD1 and GLUT1

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Cells were harvested and lysed in RIPA buffer (BOSTER, Cat No. AR0105) supplemented with protease and phosphatase inhibitors for 10 min on ice. Then cellular debris were removed by centrifugation at 12,000 rpm for 15 min at 4 °C and protein concentrations were determined by BCA Kit (BOSTER, Cat No.AR0197). 50 μg of total protein were subjected to denaturing 10% SDS-PAGE, and then transferred to a membrane for subsequent blotting with specific antibodies. Anti-FOXD1(Invitrogen, Cat No. PA5-35145), anti-GLUT1(abcam, Cat No. ab115730), anti-β-actin (Proteintech, Cat No.66009-1-Ig). All the full and uncropped western blots are uploaded as ‘Supplemental Material’.
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4

Western Blot Analysis of Diverse Cellular Proteins

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Following antibodies were used for IB analysis. Anti-USP21 (catalog MA5-34953), anti-FOXD1 (catalog PA5-27142) were purchased from Invitrogen. Anti-TAZ (catalog ab84927), anti-C/EBPβ (catalog ab32358), anti-c-MET (catalog ab74217), anti-ALDH1A3 (catalog ab129815), anti-OLIG2 (catalog ab109186), anti-Flag (catalog ab205606), anti-Myc (catalog ab32), anti-HA (catalog 236632), and GAPDH (catalog ab8245) were purchased from Abcam. Anti-CD44 (catalog 3570), anti-p-STAT3 (catalog 9145), anti-STAT3 (catalog 9139), anti-mouse IgG (catalog 5415), anti-rabbit IgG (catalog 3900), and anti-GST (catalog 2624) were purchased from Cell Signaling Technology.
Samples or cells with indicated treatments were lysed with cell lysis buffer (Beyotime, catalog P0013) with protease Cocktail Inhibitor (MCE, catalog HY-K0010) at 4 °C for 30 minutes. The lysates were centrifugated at 12,000 rpm for 20 min. Cell lysates were subjected to SDS-PAGE, transferred onto a polyvinylidenedifluoride membrane (Roche, catalog 03010040001), followed by incubation overnight at 4 °C with primary antibodies. The membrane was incubated with horseradish peroxidase (HRP)-conjugated secondary antibodies for 2 h. Proteins were then detected with the enhanced chemiluminescence methods.
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