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121 protocols using β actin

1

Quantitative Protein Analysis of Myocardial Tissue

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The total protein was obtained from leaf ventricular myocardial tissues after extraction with the RIPA lysis buffer (P0013B, Beyotime, Chine). Protein concentration was measured by the Pierce™ BCA Protein Assay Kit (Thermo Scientific, USA). A total of 60 μg total protein was electrophoresed and separated with 10% SDS-PAGE and transferred onto nitrocellulose membranes (Millipore, US). After blocking with 5% fat-free milk at room temperature for 2 h, the membrane was incubated overnight at 4°C with primary antibody raised in mice against Akt (1 : 1000), FOXO3 (1 : 1000), Beclin (1 : 1000), Actin (1 : 1000), pi3k (1 : 1000), mTOR (1 : 1000), p-Akt (Ser473, 1 : 1000), GSK-3β (1 : 1000), and TORC2 (1 : 1000). All antibodies were purchased from Cell Signaling Technology (USA). Then, the membranes were incubated with HRP-conjugated secondary antibodies (1 : 2000; Cell Signaling Technology, USA) at room temperature for two hours. The immunoreactive bands were visualized using the enhanced chemiluminescence kit (ECL Millipore Corp., Bedford, MA, USA) in a western blotting detection system (Bio-Rad, CA, USA). Developed films were scanned and Image-ProPlus 5.1 was used for quantitative analysis. In this experiment, β-actin (1 : 1500, Bioss, Beijing, China) was used as the standard and the results were expressed as density values normalized to β-actin.
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2

Protein Extraction and Western Blot Analysis

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All protein samples were prepared as follows: 0.5 g of tissue was frozen in liquid nitrogen, ground to yield tissue powder, and then suspended in ice-cold RIPA lysis buffer (ABcom Co., Ltd., Shanghai, China). The suspension was then sonicated for 1 min at 0–8°C and centrifuged at 8000 ×g for 30 min. The protein concentration was determined by BCA (Sigma, Shanghai, China) assay. The lysates were then separated electrophoretically in 12% polyacrylamide gels and transferred onto PVDF membranes (Beijing Biosynthesis Biotechnology Co., Ltd., Beijing, China). The membranes were blocked for 1.5 h at room temperature in 5% nonfat milk and incubated overnight at 4–8°C with TSHR, TTF-1, and PAX8 antibodies (the same as those used in immunohistochemistry), respectively. After the triple wash in Tris buffered saline with tween (TBST) for 30 min, the membranes were incubated with HRP-conjugated secondary antibodies for 45 min and then triple washed again in TBST. Immune reactive bands were revealed using ECL detection system. In the negative group, 2% BSA was used instead of the primary antibodies. β-actin (Beijing Biosynthesis Biotechnology Co., Ltd., Beijing, China) was also detected as an internal control. The X-ray film was scanned, and the band density was calculated using ImageJ 1.45 software.
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3

Immunoblot analysis of liver proteins

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Protein concentration of each liver sample was determined as previously described60 (link). The protocol for immunoblot analysis was also previously described60 (link). The following antibodies were used in this study: Complement C5 (Cat. No. bs-15197R, Beijing Biosynthesis Biotechnology Co., Ltd. Beijing, China), TNFα (Cat. No. bs-10802R, Beijing Biosynthesis Biotechnology Co., Ltd. Beijing, China) and β-Actin (Cat. No. sc-47778; Santa Cruz Biotechnology, Inc., Santa Cruz, CA).
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4

Cerebellum Tissue Protein Extraction and Quantification

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Protein samples were extracted from the cerebellum tissues and quantified using commercially available kits (Beyotime institute of biotechnology, P.R. China). Detailed treatment methods were performed as previously described (Zhang et al. 2019 (link)). MTF1 (1:700) antibody was purchased from Nan-Jing AnYan Biotechnology Co., Ltd; SepSecS (1:500) antibody was synthesized from Jin-Long Li Lab; GPX4 (1:800) antibody was purchased from Abclonal, USA; β-actin (1:1000, Beijing Biosynthesis Biotechnology Co., Ltd); and secondary antibody against rabbit IgG was purchased from Santa Cruz, CA.
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5

Western Blot Analysis of Stress Markers

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Proteins were extracted from the colon according to the manufacturer’s instructions. BCA protein assay kit was used to detect the concentration of extracted proteins. Equal amounts of protein were loaded and separated by 10% sodium dodecyl sulfate-polyacrylamide gel electrophoresis. Then the proteins were transferred onto poly-vinylidene difluoride (PVDF) membranes, which were immunoblotted with the appropriate primary antibody at 4 °C overnight. Then the membranes were incubated with secondary antibodies. The anti-p-eIF2α, ATF4, XBP1s, CHOP, HO-1 and β-actin monoclonal antibodies were purchased from Beijing Biosynthesis Biotechnology Co., Ltd. The protein concentration was determined by the BCA method. Western blot analysis was performed as previously described[22 (link)].
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6

Quantifying Cerebellar Protein Levels

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Proteins were extracted from tissues of cerebellum and then quantified through use of commercially available kits (Beyotime Institute of Biotechnology, P.R. China). Detailed methods of treatment were adopted as specified in Xue et al. (Zhao et al., 2020c (link); Talukder et al., 2021 ). The MTF1 (1:700) antibody was purchased from Nan-Jing AnYan Biotechnology Co., Ltd; the Sep (O-phosphoserine) tRNA:Sec (selenocysteine) tRNA synthase (SepSecS) (1:500) antibody was synthesized from Jinlong Li Lab; the Gpx4 (1:800) antibody was purchased from Abclonal, USA; the β-actin (1:1000) was purchased from Beijing Biosynthesis Biotechnology Co., Ltd; the secondary antibody against rabbit immunoglobulin G (IgG) (1:3000) was purchased from Santa Cruz, CA, USA.
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7

Comprehensive Protein Expression Analysis in Stem Cells

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Cells or tumor tissues were collected and lysed using RIPA lysis buffer supplemented with a protease and phosphatase inhibitor cocktail (Beyotime Biotechnology). Cell lysates in 1× loading buffer were resolved by 12% SDS-PAGE and transferred on polyvinylidene fluoride membranes (Milipore, Bedford, MA, USA). After blocking with 5% skimmed milk for 1 h, the membranes were incubated with primary rabbit antibodies against β-actin, Sox2, Oct4, ALDH1, Nanog, CD49f (1:300, Beijing Biosynthesis Biotechnology Co., LTD, Beijing, China), Vimentin, E-cadherin, and N-cadherin (1:1000, Proteintech Group, Chicago, USA) overnight at 4 °C. The primary antibodies were detected with peroxidase-conjugated goat anti-rabbit IgG (H + L) secondary antibody (Zhongshan Goldenbridge Biotechnology Co., Ltd., Beijing, China). Positive signals were detected using the BeyoECL Plus kit (Beyotime Institute of Biotechnology, Shanghai, China) and a western blot analysis system (Universal Hood II, Bio-Rad, USA).
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8

Protein Expression Analysis Protocol

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After treatments, the cells or tumor tissues were collected and lysed using the RIPA lysis buffer supplemented with a protease and phosphatase inhibitor cocktail (Beyotime Biotechnology). The primary rabbit antibodies against β-actin, GAPDH, Bcl-2, Bax, Cleaved caspase-3 (1:300 Beijing Biosynthesis Biotechnology Co., LTD, Beijing, China), CyclinD1, CDK4, Erk1/2, pho-Erk1/2, Akt, pho-Akt, p38, pho-p38, PI3K (1:1000, Cell Signaling Technology, Inc. Danvers, USA), JNK, and pho-JNK (1:1000, Abcam, MA, USA) were used as above.
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9

Esculetin Isolation, Identification, and Purity Assessment

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The isolation, identification, and purity assessment of esculetin were performed in
our laboratory as previously described (12 ).
5-Fu was obtained from Tianjing Jinyao Anjisuan Medicine Co., Ltd. (China). The
Annexin V-FITC apoptosis detection kit was purchased from Beijing Biosea
Biotechnology Co., Ltd. (China). Propidium iodide (PI), dimethyl sulfoxide (DMSO),
and 3-(4,5-dimethylthiazol)-2,5-diphenyltetrazolium bromide (MTT) were obtained from
Amresco (USA). β-actin, caspase-3/-9, Bcl-2 and Bax antibodies were from Beijing
Biosynthesis Biotechnology (China).
5,5′,6,6′-tetrachloro-1,1′,3,3′-tetraethyl-benzimidazol-carbocyanine iodide (JC-1)
and the RT-PCR kit were obtained from Beyotime Institute of Biotechnology (China).
Dulbecco's modified Eagle's medium (DMEM) was from Gibco (USA) and trypsin from
Hyclone (USA).
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10

Prostate Cancer Cell Signaling Pathway Analysis

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Prostate cancer cells were cultured and treated with CRAd and Adbic adenoviral vectors at different MOI. After 48 h, cells were collected and treated with RIPA lysis buffer for 30 min on ice to obtain cell lysate. Thirty micrograms of total protein was electrophoresed on 15% polyacrylamide gel electrophoresis and transferred onto PVDF membranes (Millipore, Billerica, MA, USA). Membranes were then subjected to treatment with primary antibodies against p53 (1:500), Mdm2 (1:500), p21 (1:500), Bax (1:500), Bcl2 (1:500), and β-actin (BIOSS Antibodies, Boston, USA). Membranes were incubated at 4 °C, overnight, then membranes were washed three times (15 min each) with TBS. After washing, the membranes were treated with secondary antibodies for 2 h at room temperature, then membranes were washed with TBS, and quantification of bands was performed by using Kodak digital camera and analysis software (Kodak, Rochester, NY, USA). The data were normalized to β-actin for analyses and plotting.
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