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6 protocols using anti poly adp ribose polymerase 1 parp 1

1

Antibody Acquisition for EMT Analysis

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Anti-vimentin, anti-Snail, and anti-Slug antibodies were purchased from Cell Signaling Technology (Danvers, MA, USA). Anti-NUCB2, anti-Twist1, and anti-Ki-67 antibodies were obtained from Abcam (Cambridge, MA, USA). Anti-E-cadherin, anti-p21waf1, anti-BCL2, and anti-cyclin D1 antibodies were from Dako (Copenhagen, Denmark). Anti-p27kip1, anti-Rb, anti-X-linked inhibitor of apoptosis (XIAP), anti-BAX, and anti-N-cadherin antibodies were from BD Biosciences (San Jose, CA, USA). Anti-ZEB1 and anti-β-actin antibodies and adriamycin (ADR: D1515) were from Sigma-Aldrich Chemicals (St. Louis, MO, USA). Anti-phospho (p) Rb at Ser807/811, anti-cleaved caspase-3, and anti-poly (ADP-ribose) polymerase 1 (PARP1) antibodies were purchased from Cell Signaling Technology (Danvers, MA, USA). Anti-cyclin A2 and anti-cyclin B1 antibodies were from Novocastra (Newcastle, UK) and Santa Cruz Biotech (Santa Cruz, CA, USA), respectively.
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2

Kidney Protein Expression Analysis

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Kidney tissues were prepared using a lysis buffer (20 mM Tris-HCl (pH 7.4), 1% Nonidet P-40 (NP-40), 5 mM ethylenediaminetetraacetic acid (EDTA), 2 mM Na3VO4, 100 mM NaF, 10 mM Na4P2O7, 100 μM phenylmethylsulfonyl fluoride (PMSF), 7 μg/mL aprotinin, and 7 μg/mL leupeptin). Proteins were resolved by sodium dodecyl sulfate- (SDS-) polyacrylamide gel electrophoresis and then transferred to polyvinylidene difluoride (PVDF) membrane. After blocking, the membrane was incubated with the following primary antibodies: anti-Bax (Cell Signaling Technology, Danvers, MA, USA), anti-caspase-3 (Cell Signaling Technology), anti-poly(ADP-ribose) polymerase-1 (PARP-1; Cell Signaling Technology), anti-heme oxygenase-1 (HO-1; Santa Cruz Biotechnology), anti-NAD(P)H:quinone oxidoreductase 1 (NQO1; Santa Cruz Biotechnology), and anti-β-actin (Sigma-Aldrich). The membrane was washed and incubated with a horseradish peroxidase-conjugated secondary antibody, and signals were detected using an enhanced chemiluminescence (ECL) Western blotting detection system (ImageQuant LAS4000; GE Healthcare Life Sciences, Pittsburgh, PA, USA). Relative protein expression was quantified using NIH ImageJ software.
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3

Comprehensive Antibody Inventory for Cell Analysis

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Anti‐Ezrin/radixin/moesin (ERM), anti‐phospho (p) Ezrin (at Thr567)/radixin (at Thr564)/moesin at Thr558) (pERM), anti‐poly (ADP‐ribose) polymerase 1 (PARP1), and anti‐vimentin antibodies were purchased from Cell Signaling Technology (Danvers, MA, USA). Anti‐EBP50, anti‐β‐actin, anti‐MYH9 (mouse), anti‐vinculin, and anti‐Sox2 antibodies were obtained from Abcam (Cambridge, MA, USA). Anti‐E‐cadherin, anti‐p21waf1, and anti‐cyclin D1 antibodies were from Dako (Copenhagen, Denmark). Anti‐cyclin A2 and anti‐cyclin E antibodies were from Novocastra (Newcastle, UK). Anti‐p27kip1, anti‐aldehyde dehydrogenase 1 (ALDH1), and anti‐N‐cadherin antibodies were from BD Biosciences (San Jose, CA, USA). Anti‐MYH9 (Rabbit) and anti‐cyclin B1 antibodies were purchased from Proteintech (Rosemont, IL, USA) and Santa Cruz Biotech (Santa Cruz, CA, USA), respectively. Blebbistatin and MG132 were obtained from Toronto Research Chemicals (North York, ON, Canada) and Sigma‐Aldrich Chemicals (St. Louis, MO, USA), respectively.
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4

Western Blot Analysis of Cell Signaling

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Whole-cell lysate preparation and Western blot analysis were performed as described [23,24] . Phospho-specific anti–DNA-PKcs antibodies were described previously [23–25] . Antibodies used in this study include anti-Cdk1, anti–phospho-Cdk1 (pY15), anti-Cdc25C, anti-Wee1, anti-Myt1, anti–cyclin B1, anti–poly(ADP-ribose) polymerase 1 (PARP-1) (Cell Signaling Technology, Danvers, MA), anti–phospho-histone H3 (pH3), anti–cyclin A (Upstate), anti-Plk1 (Bethyl Laboratories, Montgomery, TX), and anti–β-actin (Sigma-Aldrich, St. Louis, MO) and were commercially available as indicated.
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5

Protein Expression Analysis in Cells

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Tissues or cells were lysed and 30–60 μg protein were subjected to SDS-PAGE, transferred to nitrocellulose membranes (Whatman, Schleicher & Schuell, Dassel, Germany) and blocked in 5% (w/v) dry nonfat milk (Difco, Sparks, MD, USA) as described previously [31 (link)]. Membranes were incubated with primary rabbit polyclonal antibodies: anti-Flotillin-1, anti-PCNA (Santa Cruz Biotechnology), anti-GAPDH (Abcam), anti- poly (ADP-ribose) polymerase-1 (PARP-1), anti-cleaved caspase-9, anti-caspase-9 (Cell Signaling Technology) and anti-β-actin (Sigma–Aldrich). Primary rabbit monoclonal antibodies included: anti-cleaved PARP-1, anti-cleaved caspase-3, anti-caspase-3, anti-caspase-7, and anti-cleaved caspase-7 (Cell Signaling Technology). Secondary antibodies were obtained from Jackson ImmunoResearch (West Grove, PA, USA). Proteins were visualized using an enhanced chemiluminescence kit. Densitometry was assessed using the Gelpro32 analyzer software.
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6

Liver Protein Expression Analysis

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Proteins were extracted from liver tissues with a lysis buffer (Sigma-Aldrich). Protein samples were separated by sodium dodecyl sulfate-polyacrylamide gel electrophoresis and then transferred to a nitrocellulose membrane. The membranes were incubated with one of the following primary antibodies: anti-cleaved caspase-3 (1:1000; Cell Signaling, Danvers, MA, USA), anti-poly(ADP-ribose) polymerase-1 (PARP-1; 1:1000; Cell Signaling) anti-tumor necrosis factor-α (TNF-α; 1:1000; Abcam), anti-IL-6 (1:1000; Abcam), anti-IκBα (1:1000; Cell Signaling), anti-p-IκBα (1:1000; Cell Signaling), anti-nuclear factor-κB (NF-κB) p65 (1:1000; Cell Signaling), anti-p-NF-κB p65 (1:1000; Cell Signaling), anti-transforming growth factor-β1 (TGF-β1; 1:1000; Abcam), anti-Smad2/3 (1:1000; Cell Signaling), anti-p-Smad2/3 (1:1000; Cell Signaling), anti-glyceraldehyde-3-phosphate dehydrogenase (GAPDH; 1:3000; Cell Signaling). The membranes were washed and probed with a secondary antibody conjugated with horseradish peroxidase. The signal intensities were analyzed using the iBright™ CL1500 Imaging System (Thermo Fisher Scientific, Waltham, MA, USA).
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