The largest database of trusted experimental protocols

27 protocols using ab109390

1

Multiplex Immunohistochemistry for AD Markers

Check if the same lab product or an alternative is used in the 5 most similar protocols
Deparaffinized fixed sections were pretreated in 98% formic acid for 6 min to enhance immunoreactivity. After blocking with 10% normal goat serum (ngs) in PBS with 0.2% Tween 20 (PBST), sections were incubated at room temperature in primary antibodies overnight followed by secondary antibodies for 2 h. Primaries were prepared in 10% normal goat serum and applied as combinations of either: 1) anti-Aβ1-40 rabbit polyclonal (Millipore Sigma #AB5074P, 1:200) and anti-Aβ1-42 12F4 mouse monoclonal (Biolegend #805502, 1:200); 2) anti-Aβ17-24 4G8 mouse monoclonal (Biolegend #800709 1:1000) and anti-tau (phospho-S262) rabbit polyclonal (Abcam #ab131354, 1:200); or 3) anti-tau Alzheimer’s Disease conformation specific GT-38 mouse monoclonal antibody (Abcam #ab109390, 1:150) and anti-tau (phospho-S396) rabbit monoclonal (Abcam #ab109390, 1:200). Polyclonal IgG H&L secondaries were Alexa Fluor 488- and 647-conjugates (Thermo Fisher #s A11029, A21235, A11008, and A21244) applied 1:500 in 10% ngs in PBST. Stained slides were scanned on a ZEISS Axio Scan Z1 digital slide scanner at 20x magnification. Excitation at 493, 553, and 653 nm was followed by detection at 517 nm (Aβ40 or pTau), 568 nm (autofluorescence), and 668 nm (Aβ42 or tau).
+ Open protocol
+ Expand
2

Phosphor-Serine-396 Tau Protein Quantification

Check if the same lab product or an alternative is used in the 5 most similar protocols
A similar sELISA protocol was applied for the quantification of phosphor-Serine-396 tau protein in the cortex and hippocampus. We used chicken-anti-tau (ab75714, Abcam, Cambridge, UK) as coating antibody and rabbit-anti-phosphor-ser396-tau (ab109390, Abcam, Cambridge, UK) as detection antibody.
+ Open protocol
+ Expand
3

Tau Isoform-Specific Antibodies Analysis

Check if the same lab product or an alternative is used in the 5 most similar protocols
The following anti-tau antibodies were used in this study: RD4 (1:1,000, 05–804, Millipore), Tau5 (1:4,000, MA5-12808, ThermoFisher), 2B11 (1:500, 10237, IBL), AT8 (1:1,000, MN1020, ThermoFisher), AT100 (1:1,000, MN1060, Invitrogen), Ser262 (1:2,000, ab64193, Abcam), and pS396 (1:2,000, ab109390, Abcam). The mouse monoclonal antibody (mAb) RD4 (directed to amino acids 275–291 of 4-repeat [4R] tau) preferentially recognizes 4R isoform of tau [37]. The mAbs 2B11 (directed to residues 306–312) and Tau5 (recognizing amino acids 218–225) react with both 3R and 4R isoforms of tau. The rabbit polyclonal serum Ser262 reacts with both non-phosphorylated and phosphorylated serine at residue 262. Phosphorylation-dependent antibodies AT8, AT100 and pS396 recognizes pSer202/pSer205, pThr212/pSer214/pThr217, and pSer396, respectively [38,39].
+ Open protocol
+ Expand
4

Western Blot Analysis of Protein Expression

Check if the same lab product or an alternative is used in the 5 most similar protocols
Cell protein was extracted using RIPA lysis buffer and quantified using BCA protein assay kit (Beyotime, Shanghai, China). The equal amounts of denatured proteins were separated by SDS-PAGE gel electrophoresis, transferred onto polyvinylidene difluoride membranes (Millipore, Billerica, MA, USA) and blocked with 5% BSA. The membranes were incubated with rabbit primary antibodies against p-Tau (ab109390, Abcam, Cambridge, MA, USA), ZNF217 (PA5-40738, Invitrogen) or β-actin (ab8227, Abcam) overnight at 4 °C and then interacted with appropriate second antibody (ab6721, Abcam) for 2 h at room temperature. The protein bands were visualized using enhanced chemiluminescence chromogenic substrate (Beyotime) and the relative expressions of protein were analyzed by Image Lab software (Bio-Rad) with β-actin as a loading control and normalized to corresponding control group.
+ Open protocol
+ Expand
5

Quantitative Analysis of Tau Phosphorylation

Check if the same lab product or an alternative is used in the 5 most similar protocols
Paraffin‐embedded brain sections of 7‐µm‐thick were immunostained for pTau‐ S396 (1:100; #Ab109390, Abcam, MA) and pTau‐S396/S404 (PHF1; 1:250; Peter Davies) using a Bond Rx autostainer (Leica Biosystems, IL), according to the manufacturer's instructions. One set of sections was also incubated for 4 min in thionin to visualize neurons. [23 (link)] Briefly, slides were batch processed with the following settings: Bake and Dewax, IHC protocol F 60 min, HIER 20 min with ER1. Slides were then transferred into water and dehydrated by 1‐min incubations into baths of 70% ethanol, 95% ethanol, 100% ethanol, and xylene. Slides were then cover slipped using Permount Mounting Medium (Fisher Scientific) and left to dry overnight. All the sections were stained at the same time for either pTau‐S396, PHF1, or thionin using the same antibody cocktail. Slides were scanned using an Olympus VS120 virtual slide microscope at a magnification of 20X. Scanned slide images were analyzed in Olympus cellSens and OlyVIA analysis software.
+ Open protocol
+ Expand
6

Amyloid-beta Oligomer Preparation and Analysis

Check if the same lab product or an alternative is used in the 5 most similar protocols
Aβ1-42 was purchased from GL Biochem (Shanghai) Ltd. (China) and was prepared as oligomers by incubating at a concentration of 1 mg/mL in sterile saline solution, followed by aggregation via incubation at 37°C for 4 days. In Situ Cell Death Detection Kit (11684817910) was purchased from Roche (Switzerland). Enzyme-Linked Immunosorbent Assay (ELISA) Detection Kits for brain derived neurotrophic factor (BDNF) (SEA011Mu) and nerve growth factor (NGF) (SEA105Mu) were purchased from USCN (China). RIPA lysis buffer and (P0013B), BCA Protein Concentration Kit (P0009) and ECL Plus reagent (P0018) were obtained from Beyotime Biotechnology (China). Antibody against GSK-3β (24198-1-AP) was purchased from Proteintech (China). Antibodies against phosphorylated GSK-3β (p-GSK-3β) (#5558), p-β-catenin (#9561), and Bax (#2772) were purchased from CST (USA). Antibodies against Tau (ab32057), p-Tau (ab109390), β-catenin (ab32572), cleaved caspase 3 (ab49822), Bcl-2 (ab196495), and doublecortin (ab18723) were purchased from Abcam (UK). β-actin (bsm-33036M) was purchase from Bioss (China). Secondary IgG-HRP goat anti-rabbit (A0208) and goat anti-murine (A0216) antibodies were purchased from Beyotime Biotechnology (China). Secondary Cy3-labled antibody goat anti-rabbit (A0277) was purchased from Beyotime Biotechnology (China).
+ Open protocol
+ Expand
7

Quantitative Analysis of Tau Phosphorylation

Check if the same lab product or an alternative is used in the 5 most similar protocols
The tissues in the injured hemisphere were homogenized with lysis buffer containing protease and phosphatase inhibitor. Then, the homogenates were centrifuged at 12,000 rpm for 15 min at 4 °C and the concentrations of protein were quantified with BCA assay. Protein samples were separated by using 10% SDS-PAGE and then transferred to a polyvinylidene fluoride membrane and incubated with 5% BSA at room temperature for 2 h. Then the membranes were incubated with the primary antibodies (rabbit monoclonal antibody to Tau (phospho S396) (Abcam, ab109390), rabbit monoclonal antibody to Tau (phospho T231) (Abcam, ab151559), and mouse monoclonal antibody to GAPDH (Sigma-Aldrich, G8795)) overnight at 4 °C. Then the membranes were washed with a tris-buffered saline/t buffer for 30 min and then incubated with secondary antibodies at room temperature for 1.5 h. The protein bands were visualized by using an ECL Prime kit (Millipore, P90719). Three independent experiments were implemented.
+ Open protocol
+ Expand
8

Western Blotting of Brain Proteins

Check if the same lab product or an alternative is used in the 5 most similar protocols
Lysis of cells was performed using lysis buffer (200 μL/well). Constituents of lysis buffer were NaCl (150 mM), Tris (pH 7.6, 50 mM), Triton X-100 (1%), including phosphatase and protease inhibitors. Extracted proteins (40 μg of the total proteins) were separated by performing SDS–PAGE (7.5%). Procedure of western blotting was carried out as described by Waraich et al. and Run et al. [26 (link),27 (link)]. Following antibodies were used for western blotting: anti-GFAP, Abcam (ab7260); anti-Oligo2, Abcam (ab136253); anti-Iba1, Abcam (ab5076); anti-beta actin, Abcam (ab115777); anti-caspase-3, Abcam (ab13847); anti-cleave caspase-3, Abcam (ab32042); anti-caspase-9, Abcam, (ab202068); anti-cleave caspase-9, Abcam (ab25758); anti-tau, Abcam (ab76128); anti-tau phospho, Abcam (ab109390); anti-CaMKII, Abcam (ab22609); and anti-CaMKII phospho, Abcam (ab171095). Samples of protein were transferred to nitrocellulose membrane post-electrophoresis. Membrane was blocked by bovine serum albumin or skim milk for 2 h and later incubated overnight with primary antibody (Ab) at 4°C. After washing, membrane was incubated with secondary-Ab (anti-rabbit/mouse Ig-G conjugated to horseradish peroxidase) for 1 h at room temperature. Enhanced chemiluminescence was carried out to visualize protein expression. All western blot experiments were in triplicate. ImageJ was used for protein quantification.
+ Open protocol
+ Expand
9

Western Blot Analysis of Hippocampal Proteins

Check if the same lab product or an alternative is used in the 5 most similar protocols
Protein solutions were extracted from hippocampal tissues; then, equal amounts of protein were attached onto a sodium dodecyl sulfate-polyacrylamide gel to be separated by electrophoresis according to their molecular weight. After electrophoresis, proteins were transferred to a nitrocellulose membrane (Amersham Bioscience, Piscataway, NJ, USA) using semidry transfer apparatus (Bio-Rad, Hercules, CA, USA). The membranes' nonspecific binding sites were then blocked by soaking in 5% skimmed milk. Next, the membranes were incubated at 4°C overnight on a roller shaker with solutions containing antiphosphorylated tau (1 : 10000, Cat. # ab109390), anti-GSK-3β (1 : 5000, Cat. # ab32391), and anti-mTOR (1 : 10000, Cat. # ab134903), which were obtained from Abcam (Cambridge, MA, USA). The membranes were then washed and incubated with the horseradish peroxidase-conjugated secondary antibody solution. Finally, the blots were developed with enhanced chemiluminescence detection reagents (Amersham Biosciences, Arlington Heights, IL, USA). Scanning laser densitometry (GS-800 system, Bio-Rad, Hercules, CA, USA) was used to determine the quantities of the target proteins. The results were normalized with β-actin protein expression and expressed as arbitrary units.
+ Open protocol
+ Expand
10

Immunohistochemical Analysis of Alzheimer's Disease Markers

Check if the same lab product or an alternative is used in the 5 most similar protocols
Microglia-macrophages were visualized using polyclonal rabbit anti-Iba1 (Wako, C19-19741) and monoclonal mouse anti-CD68 (Cluster of Differentiation 68) (Abcam, ab783, clone PG-M1 and Abcam, ab955, clone KP1). Aβ was visualized by biotinylated mouse anti-Aβ IgG1 (clone 6E10) raised against residues 1–16 of human Aβ (BioLegend, SIG-39340) and phosphorylated tau by using either biotin-labeled monoclonal mouse anti-PHF tau (S202, T205) (Thermo Scientific, MN1020B, clone AT8) or monoclonal rabbit anti-tau (S396) (Abcam, ab109390, clone EPR2731). EnVision + System-HRP Labelled Polymer Anti-Rabbit (DAKO, K4003) or Alkaline Phosphatase (AP) Anti-Rabbit (Sigma A3812) were used for detection of Iba1 and tau (S396), EnVision + System-HRP Labelled Polymer Anti-Mouse (Dako, K4001) for detection of CD68 and tau (S202, T205), and HRP-Streptavidin (SA) (RPN1231V, GE Healthcare UK Limited) for detection of biotinylated mouse anti-Aβ, respectively. Rabbit IgG (Dako X903), mouse IgG1 (Dako, X0931), and biotinylated mouse IgG1 (Invitrogen, MG115) were used for substitution control.
+ Open protocol
+ Expand

About PubCompare

Our mission is to provide scientists with the largest repository of trustworthy protocols and intelligent analytical tools, thereby offering them extensive information to design robust protocols aimed at minimizing the risk of failures.

We believe that the most crucial aspect is to grant scientists access to a wide range of reliable sources and new useful tools that surpass human capabilities.

However, we trust in allowing scientists to determine how to construct their own protocols based on this information, as they are the experts in their field.

Ready to get started?

Sign up for free.
Registration takes 20 seconds.
Available from any computer
No download required

Sign up now

Revolutionizing how scientists
search and build protocols!